ISDA: 4CJ8

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Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: UDP

IUPAC Name: URIDINE-5'-DIPHOSPHATE

Formal Charge: 0

Type: RNA LINKING

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1ccn([C@H]2CCCO2)c(=O)[nH]1

InChI: InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1

InChI Key: CWWIKVUHBBTKHC-SSDOTTSWSA-N

Physiochemical Descriptor:

Formula: C9 H14 N2 O12 P2

Molecular weight: 404.161

Hydrogen Bond Acceptor: 13

Hydrogen Bond Donor: 6

Rotatable Bonds: 11

Heavy Atoms: 25

Systematic name

Program	Version	Descriptor
ACDLabs	12.01	uridine 5'-(trihydrogen diphosphate)
OpenEye OEToolkits	1.7.0	[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
SMILES_CANONICAL	CACTVS	3.370	O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES	CACTVS	3.370	O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES_CANONICAL	OpenEye OEToolkits	1.7.0	C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
SMILES	OpenEye OEToolkits	1.7.0	C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
InChI	InChI	1.03	InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey	InChI	1.03	XCCTYIAWTASOJW-XVFCMESISA-N

Chemical Database Mapping