Structural Complex
Chemical ID: 5IA
IUPAC Name: 2-{[(2S)-6-[(Z)-(1-{[(2R,3R,4R,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4-hydroxy-2-sulfanyloxolan-3-yl]oxy}tetradecylidene)amino]-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)
Formal Charge: 1
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(NCCCCC/N=C\O[C@H]1CO[C@H](CO[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H](n3cnc4cncnc43)O2)C1)OCc1ccccc1
InChI: InChI=1S/C29H40N6O10P2/c36-29(40-15-22-7-3-1-4-8-22)32-12-6-2-5-11-30-21-41-24-13-25(39-16-24)18-43-47(38)45-46(37)42-17-23-9-10-27(44-23)35-20-34-26-14-31-19-33-28(26)35/h1,3-4,7-8,14,19-21,23-25,27,46-47H,2,5-6,9-13,15-18H2,(H,32,36)/b30-21-/t23-,24+,25-,27+/m0/s1
InChI Key: GXYKCUNLEFWVQE-FKKQZBNNSA-N
Physiochemical Descriptor:
Formula: C51 H86 N9 O16 P2 S
Molecular weight: 1175.292
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 9
Rotatable Bonds: 48
Heavy Atoms: 79
Systematic name
Program Version Descriptor
ACDLabs 12.01 2-{[(2S)-6-[(Z)-(1-{[(2R,3R,4R,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4-hydroxy-2-sulfanyloxolan-3-yl]oxy}tetradecylidene)amino]-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)
OpenEye OEToolkits 2.0.7 2-[[(2~{S})-6-[(~{Z})-1-[(2~{R},3~{R},4~{R},5~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-4-oxidanyl-2-sulfanyl-oxolan-3-yl]oxytetradecylideneamino]-2-(phenylmethoxycarbonylamino)hexanoyl]amino]ethyl-triethyl-azanium
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(S)C(O/C(=N\CCCCC(NC(=O)OCc3ccccc3)C(=O)NCC[N+](CC)(CC)CC)CCCCCCCCCCCCC)C2O)C(O)C1O
InChI InChI 1.03 InChI=1S/C51H85N9O16P2S/c1-5-9-10-11-12-13-14-15-16-17-21-27-40(53-28-23-22-26-37(48(64)54-29-30-60(6-2,7-3)8-4)58-51(65)70-31-36-24-19-18-20-25-36)75-45-43(62)39(74-50(45)79)33-72-78(68,69)76-77(66,67)71-32-38-42(61)44(63)49(73-38)59-35-57-41-46(52)55-34-56-47(41)59/h18-20,24-25,34-35,37-39,42-45,49-50,61-63H,5-17,21-23,26-33H2,1-4H3,(H6-,52,54,55,56,58,64,65,66,67,68,69,79)/p+1/b53-40-/t37-,38+,39+,42+,43+,44+,45+,49+,50+/m0/s1
InChIKey InChI 1.03 NDEIYVWRFNKRPD-LQYQRRKDSA-O
SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCC(O[C@H]1[C@@H](S)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O)=NCCCC[C@H](NC(=O)OCc5ccccc5)C(=O)NCC[N+](CC)(CC)CC
SMILES CACTVS 3.385 CCCCCCCCCCCCCC(O[CH]1[CH](S)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O)=NCCCC[CH](NC(=O)OCc5ccccc5)C(=O)NCC[N+](CC)(CC)CC
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCC/C(=N/CCCC[C@@H](C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc1ccccc1)/O[C@@H]2[C@@H]([C@H](O[C@@H]2S)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O
SMILES OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCCC(=NCCCCC(C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc1ccccc1)OC2C(C(OC2S)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O