Structural Complex
Chemical ID: 5I7
IUPAC Name: (phenylmethyl) ~{N}-[(2~{S})-6-[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-6-oxidanyl-2-tridecyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]amino]-1-oxidanylidene-1-[2-(triethyl-$l^{4}-azanyl)ethylamino]hexan-2-yl]carbamate
Formal Charge: 1
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(NCCCCCNC1O[C@@H]2C[C@@H](CO[PH](=O)O[PH](=O)OC[C@@H]3CC[C@H](n4cnc5cncnc54)O3)O[C@@H]2S1)OCc1ccccc1
InChI: InChI=1S/C29H40N6O10P2S/c36-28(39-15-20-7-3-1-4-8-20)31-11-5-2-6-12-32-29-44-24-13-22(43-27(24)48-29)17-41-47(38)45-46(37)40-16-21-9-10-25(42-21)35-19-34-23-14-30-18-33-26(23)35/h1,3-4,7-8,14,18-19,21-22,24-25,27,29,32,46-47H,2,5-6,9-13,15-17H2,(H,31,36)/t21-,22-,24+,25+,27+,29+/m0/s1
InChI Key: ZDVKFXCSQACIQM-XCLFQIEMSA-N
Physiochemical Descriptor:
Formula: C51 H86 N9 O16 P2 S
Molecular weight: 1175.292
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 9
Rotatable Bonds: 47
Heavy Atoms: 79
Systematic name
Program Version Descriptor
ACDLabs 12.01 2-{[(2S)-6-{[(2R,3aR,5R,6R,6aR)-5-({[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-6-hydroxy-2-tridecyltetrahydro-2H-furo[2,3-d][1,3]oxathiol-2-yl]amino}-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)
OpenEye OEToolkits 2.0.7 2-[[(2~{S})-6-[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-6-oxidanyl-2-tridecyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]amino]-2-(phenylmethoxycarbonylamino)hexanoyl]amino]ethyl-triethyl-azanium
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 CC[N+](CC)(CC)CCNC(=O)C(NC(=O)OCc1ccccc1)CCCCNC1(OC2C(O)C(COP(=O)(O)OP(=O)(O)OCC3OC(n4cnc5c(N)ncnc54)C(O)C3O)OC2S1)CCCCCCCCCCCCC
InChI InChI 1.03 InChI=1S/C51H85N9O16P2S/c1-5-9-10-11-12-13-14-15-16-17-22-27-51(57-28-23-21-26-37(47(64)53-29-30-60(6-2,7-3)8-4)58-50(65)70-31-36-24-19-18-20-25-36)75-44-42(62)39(74-49(44)79-51)33-72-78(68,69)76-77(66,67)71-32-38-41(61)43(63)48(73-38)59-35-56-40-45(52)54-34-55-46(40)59/h18-20,24-25,34-35,37-39,41-44,48-49,57,61-63H,5-17,21-23,26-33H2,1-4H3,(H5-,52,53,54,55,58,64,65,66,67,68,69)/p+1/t37-,38+,39+,41+,42+,43+,44+,48+,49+,51+/m0/s1
InChIKey InChI 1.03 DVXJRXQMZVZLQP-OACJPHNQSA-O
SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCC[C@@]1(NCCCC[C@H](NC(=O)OCc2ccccc2)C(=O)NCC[N+](CC)(CC)CC)O[C@@H]3[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)O[C@@H]3S1
SMILES CACTVS 3.385 CCCCCCCCCCCCC[C]1(NCCCC[CH](NC(=O)OCc2ccccc2)C(=O)NCC[N+](CC)(CC)CC)O[CH]3[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)O[CH]3S1
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCC[C@]1(O[C@@H]2[C@@H]([C@H](O[C@@H]2S1)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)NCCCC[C@@H](C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc6ccccc6
SMILES OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCCC1(OC2C(C(OC2S1)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)NCCCCC(C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc6ccccc6