Structural Complex
Chemical ID: LCC
IUPAC Name: [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@@H]1OC2CO[C@@H]1C2
InChI: InChI=1S/C9H10N2O3/c12-9-10-2-1-3-11(9)8-7-4-6(14-8)5-13-7/h1-3,6-8H,4-5H2/t6?,7-,8-/m1/s1
InChI Key: FNCZWLRKNYRWCJ-SPDVFEMOSA-N
Physiochemical Descriptor:
Formula: C11 H16 N3 O8 P
Molecular weight: 349.234
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 4
Rotatable Bonds: 9
Heavy Atoms: 23
Systematic name
Program Version Descriptor
ACDLabs 10.04 4-amino-1-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}-5-methylpyrimidin-2(1H)-one
OpenEye OEToolkits 1.5.0 [(1R,4R,5R,7S)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-7-hydroxy-3,6-dioxabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1N=C(N)C(=CN1C3OC2(C(O)C3OC2)COP(=O)(O)O)C
SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@@H]2O[C@]3(CO[C@@H]2[C@@H]3O)CO[P](O)(O)=O)C(=O)N=C1N
SMILES CACTVS 3.341 CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)N=C1N
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)N=C1N)[C@H]2[C@H]3[C@@H]([C@@](O2)(CO3)COP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)N=C1N)C2C3C(C(O2)(CO3)COP(=O)(O)O)O
InChI InChI 1.03 InChI=1S/C11H16N3O8P/c1-5-2-14(10(16)13-8(5)12)9-6-7(15)11(22-9,3-20-6)4-21-23(17,18)19/h2,6-7,9,15H,3-4H2,1H3,(H2,12,13,16)(H2,17,18,19)/t6-,7+,9-,11-/m1/s1
InChIKey InChI 1.03 RSSHBVFUGGVGMZ-YRCORFKGSA-N
Chemical Database Mapping
Database Reference ID
PubChem 52942974
ZINC ZINC000034940871