6VLP image
Deposition Date 2020-01-24
Release Date 2020-10-14
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6VLP
Keywords:
Title:
Hop phytocystatin in space group C2221
Biological Source:
Source Organism:
Humulus lupulus (Taxon ID: 3486)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.20
R-Value Work:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hop1
Chain IDs:A
Chain Length:101
Number of Molecules:1
Biological Source:Humulus lupulus
Primary Citation
Crystal structure and physicochemical characterization of a phytocystatin from Humulus lupulus: Insights into its domain-swapped dimer
Biochim Biophys Acta Proteins Proteom 1869 140541 140541 (2020)
PMID: 32947025 DOI: 10.1016/j.bbapap.2020.140541

Abstact

Phytocystatins are a family of plant cysteine-protease inhibitors of great interest due to their biotechnological application in culture improvement. It was shown that their expression in plants increases resistance to herbivory by insects and improves tolerance to both biotic and abiotic stress factors. In this work, owing to the economical relevance of the source organism, a phytocystatin from hop (Humulus lupulus), Hop1, was produced by heterologous expression in E. coli Lemo21 (DE3) cultivated in auto-inducing ZYM-5052 medium and purified by immobilized metal ion affinity and size exclusion chromatography. Thermal denaturation assays by circular dichroism showed that Hop1 exhibited high melting temperatures ranging from 82 °C to 85 °C and high thermal stability at a wide pH range, with ΔG25's higher than 12 kcal/mol. At 20 °C and pH 7.6, the dimeric conformation of the protein is favored according to size exclusion chromatography and analytical ultracentrifugation data, although monomers and higher order oligomers could still be detected in a lesser extent. The crystal structure of Hop1 was solved in the space groups P 2 21 21 and C 2 2 21 at resolutions of 1.80 Å and 1.68 Å, respectively. In both models, Hop1 is folded as a domain-swapped dimer where the first inhibitory loop undergoes a significant structural change and interacts with their equivalent from the other monomer forming a long antiparallel beta strand, leading to loss of inhibitory activity.

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