6NNJ image
Deposition Date 2019-01-15
Release Date 2019-02-27
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6NNJ
Keywords:
Title:
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to CH31 scFv in Complex with Crystallization Chaperones 3H109L Fab and 35O22 scFv at 3.1 Angstrom
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Mutations:I559P, A605C
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:35O22 scFv heavy chain
Mutations:E10T, L11T, K12T, A16S, I68N, K83T, F84S,
Chain IDs:B (auth: D)
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:35O22 scFv light chain
Chain IDs:C (auth: E)
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Mutations:N137A, T332N, A501C
Chain IDs:D (auth: G)
Chain Length:481
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:3H109L Fab heavy chain
Chain IDs:E (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:3H109L Fab light chain
Mutations:E184M, S188M
Chain IDs:F (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CH31 scFv heavy chain
Chain IDs:G (auth: U)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CH31 scFv light chain
Chain IDs:H (auth: V)
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Improvement of antibody functionality by structure-guided paratope engraftment.
Nat Commun 10 721 721 (2019)
PMID: 30760721 DOI: 10.1038/s41467-019-08658-4

Abstact

Broadly neutralizing antibodies (bNAbs) represent a promising alternative to antiretroviral drugs for HIV-1 prevention and treatment. Selected antibodies to the CD4-binding site bolster envelope trimer binding via quaternary contacts. Here, we rationally engraft a new paratope, i.e., the extended heavy-chain framework region 3 (FR3) loop of VRC03, which mediates quaternary interaction, onto several potent bNAbs, enabling them to reach an adjacent gp120 protomer. The interactive quaternary surface is delineated by solving the crystal structure of two FR3 loop-chimeric antibodies. Chimerization enhances the neutralizing activity of several potent bNAbs against a majority of global HIV-1 strains. Compared to unmodified antibodies, chimeric antibodies display lower autoreactivity and prolonged in vivo half-life in huFcRn mice and rhesus macaques. Thus, paratope engraftment may be used to expand the epitope repertory of natural antibodies, improving their functionality for disease prevention and treatment.

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