4K99 image
Deposition Date 2013-04-19
Release Date 2013-05-15
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4K99
Keywords:
Title:
Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pppdG(2 ,5 )pdG
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclic GMP-AMP synthase
Gene (Uniprot):Cgas
Chain IDs:A
Chain Length:362
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polydeoxyribonucleotide
Molecule:DNA-F
Chain IDs:B (auth: D)
Chain Length:17
Number of Molecules:1
Biological Source:
Polymer Type:polydeoxyribonucleotide
Molecule:DNA-R
Chain IDs:C (auth: E)
Chain Length:17
Number of Molecules:1
Biological Source:
Primary Citation
Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.
Cell(Cambridge,Mass.) 153 1094 1107 (2013)
PMID: 23647843 DOI: 10.1016/j.cell.2013.04.046

Abstact

Recent studies identified cyclic GMP-AMP (cGAMP) as a metazoan second messenger triggering an interferon response. cGAMP is generated from GTP and ATP by cytoplasmic dsDNA sensor cGAMP synthase (cGAS). We combined structural, chemical, biochemical, and cellular assays to demonstrate that this second messenger contains G(2',5')pA and A(3',5')pG phosphodiester linkages, designated c[G(2',5')pA(3',5')p]. We show that, upon dsDNA binding, cGAS is activated through conformational transitions, resulting in formation of a catalytically competent and accessible nucleotide-binding pocket for generation of c[G(2',5')pA(3',5')p]. We demonstrate that cyclization occurs in a stepwise manner through initial generation of 5'-pppG(2',5')pA prior to cyclization to c[G(2',5')pA(3',5')p], with the latter positioned precisely in the catalytic pocket. Mutants of cGAS dsDNA-binding or catalytic pocket residues exhibit reduced or abrogated activity. Our studies have identified c[G(2',5')pA(3',5')p] as a founding member of a family of metazoan 2',5'-containing cyclic heterodinucleotide second messengers distinct from bacterial 3',5' cyclic dinucleotides.

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Primary Citation of related structures