Structural Complex
Chemical ID: GDO
IUPAC Name: 3'-deoxy-guanosine 5'-monophosphate
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CCCO1
InChI: InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1
InChI Key: JBXHFRZBULGPSC-ZCFIWIBFSA-N
Physiochemical Descriptor:
Formula: C10 H14 N5 O7 P
Molecular weight: 347.221
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 5
Rotatable Bonds: 8
Heavy Atoms: 23
Systematic name
Program Version Descriptor
ACDLabs 12.01 3'-deoxy-5'-guanylic acid
OpenEye OEToolkits 1.7.6 [(2S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3
InChI InChI 1.03 InChI=1S/C10H14N5O7P/c11-10-13-7-6(8(17)14-10)12-3-15(7)9-5(16)1-4(22-9)2-21-23(18,19)20/h3-5,9,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,9+/m0/s1
InChIKey InChI 1.03 FDFODSATEZEUMJ-OBXARNEKSA-N
SMILES_CANONICAL CACTVS 3.370 NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)C[C@H]3O
SMILES CACTVS 3.370 NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)C[CH]3O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 c1nc2c(n1[C@H]3[C@@H](C[C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N
SMILES OpenEye OEToolkits 1.7.6 c1nc2c(n1C3C(CC(O3)COP(=O)(O)O)O)N=C(NC2=O)N
Chemical Database Mapping
Database Reference ID
PubChem 135566825
ZINC ZINC000013517233
SureChEMBL SCHEMBL2922052