ISDA

Deposition Date 2003-11-10

Release Date 2004-12-14

Last Version Date 2023-10-25

Entry Detail

PDB ID:

1V45

Keywords:

TRANSFERASE

Title:

Crystal Structure of human PNP complexed with 3-deoxyguanosine

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.86 Å

R-Value Free:

0.24

R-Value Work:

0.18

R-Value Observed:

0.26

Space Group:

H 3 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Purine nucleoside phosphorylase
Gene (Uniprot):PNP
Chain IDs:A (auth: E)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P00491 Pfam ID:PF01048 EC:2.4.2.1

Ligand Molecules

3DG

SO4

Primary Citation

Structure of human PNP complexed with ligands.

Canduri, F, Silva, R.G, dos Santos, D.M, Palma, M.S, Basso, L.A, Santos, D.S, de Azevedo Jr, W.F, De Azevedo Jr, W.F, Canduri, F, Dos Santos, D.M, Silva, R.G, De Oliveira, J.S, De Carvalho, L.P, Basso, L.A, Mendes, M.A, Palma, M.S, Santos, D.S, Dos Santos, D.M, Canduri, F, Pereira, J.H, Dias, M.V.B, Silva, R.G, Mendes, M.A, Palma, M.S, Basso, L.A, De Azevedo, W.F, Santos, D.S.Show

Acta Crystallogr.,Sect.D 61 856 862 (2005)

PMID: 15983407 DOI: 10.1107/S0907444905005421

Abstact

Purine nucleoside phosphorylase (PNP) is a key enzyme in the purine-salvage pathway, which allows cells to utilize preformed bases and nucleosides in order to synthesize nucleotides. PNP is specific for purine nucleosides in the beta-configuration and exhibits a strong preference for purines containing a 6-keto group and ribosyl-containing nucleosides relative to the corresponding analogues. PNP was crystallized in complex with ligands and data collection was performed using synchrotron radiation. This work reports the structure of human PNP in complex with guanosine (at 2.80 A resolution), 3'-deoxyguanosine (at 2.86 A resolution) and 8-azaguanine (at 2.85 A resolution). These structures were compared with the PNP-guanine, PNP-inosine and PNP-immucillin-H complexes solved previously.

Legend

Protein

Chemical

Disease

Primary Citation of related structures