Structural Complex
Chemical ID: A1IKQ
IUPAC Name: 1-[(2R,4S,5R)-4-[[(1R,3R,4R,7S)-7-[[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-3-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-sulfanyl-phosphoryl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2C[C@H](O[PH](=O)OC[C@@]34CO[C@@H]([C@H](n5cccnc5=O)O3)[C@@H]4O[PH](=O)OC[C@H]3O[C@@H](n4cnc5cncnc54)C[C@@H]3O[PH](=O)OC[C@@H]3CC[C@H](n4cccnc4=O)O3)CO2)c(=O)[nH]1
InChI: InChI=1S/C37H43N10O18P3/c48-26-5-10-45(36(51)43-26)28-11-22(14-55-28)63-68(54)59-18-37-17-56-30(33(62-37)46-9-2-7-40-35(46)50)31(37)65-67(53)58-16-25-24(12-29(61-25)47-20-42-23-13-38-19-41-32(23)47)64-66(52)57-15-21-3-4-27(60-21)44-8-1-6-39-34(44)49/h1-2,5-10,13,19-22,24-25,27-31,33,66-68H,3-4,11-12,14-18H2,(H,43,48,51)/t21-,22-,24-,25+,27+,28+,29+,30+,31-,33+,37+/m0/s1
InChI Key: HQULUUNXURGLES-LYILFTSJSA-N
Physiochemical Descriptor:
Formula: C40 H52 N13 O20 P3 S3
Molecular weight: 1224.032
Hydrogen Bond Acceptor: 35
Hydrogen Bond Donor: 9
Rotatable Bonds: 30
Heavy Atoms: 79
Systematic name
Program Version Descriptor
OpenEye OEToolkits 2.0.7 1-[(2~{R},4~{S},5~{R})-4-[[(1~{R},3~{R},4~{R},7~{S})-7-[[(2~{R},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-3-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-sulfanyl-phosphoryl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.06 InChI=1S/C40H52N13O20P3S3/c1-17-8-52(38(58)48-32(17)42)36-30-31(40(70-36,13-63-30)14-66-76(62,79)71-20-6-27(67-22(20)10-54)51-9-18(2)35(56)49-39(51)59)73-75(61,78)65-12-24-21(7-28(69-24)53-16-46-29-33(43)44-15-45-34(29)53)72-74(60,77)64-11-23-19(55)5-26(68-23)50-4-3-25(41)47-37(50)57/h3-4,8-9,15-16,19-24,26-28,30-31,36,54-55H,5-7,10-14H2,1-2H3,(H,60,77)(H,61,78)(H,62,79)(H2,41,47,57)(H2,42,48,58)(H2,43,44,45)(H,49,56,59)/t19-,20-,21-,22+,23+,24+,26+,27+,28+,30+,31-,36+,40+,74+,75+,76+/m0/s1
InChIKey InChI 1.06 LASMOYDWHKUTQQ-CXQZBYKISA-N
SMILES_CANONICAL CACTVS 3.385 CC1=CN([C@@H]2O[C@]3(CO[C@@H]2[C@@H]3O[P@@](S)(=O)OC[C@H]4O[C@H](C[C@@H]4O[P@@](S)(=O)OC[C@H]5O[C@H](C[C@@H]5O)N6C=CC(=NC6=O)N)n7cnc8c(N)ncnc78)CO[P@](S)(=O)O[C@H]9C[C@@H](O[C@@H]9CO)N%10C=C(C)C(=O)NC%10=O)C(=O)N=C1N
SMILES CACTVS 3.385 CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O[P](S)(=O)OC[CH]4O[CH](C[CH]4O[P](S)(=O)OC[CH]5O[CH](C[CH]5O)N6C=CC(=NC6=O)N)n7cnc8c(N)ncnc78)CO[P](S)(=O)O[CH]9C[CH](O[CH]9CO)N%10C=C(C)C(=O)NC%10=O)C(=O)N=C1N
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O[P@@](=O)(OC[C@]34CO[C@H]([C@@H]3O[P@@](=O)(OC[C@@H]5[C@H](C[C@@H](O5)n6cnc7c6ncnc7N)O[P@@](=O)(OC[C@@H]8[C@H](C[C@@H](O8)N9C=CC(=NC9=O)N)O)S)S)[C@@H](O4)N1C=C(C(=NC1=O)N)C)S
SMILES OpenEye OEToolkits 2.0.7 CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=O)(OCC34COC(C3OP(=O)(OCC5C(CC(O5)n6cnc7c6ncnc7N)OP(=O)(OCC8C(CC(O8)N9C=CC(=NC9=O)N)O)S)S)C(O4)N1C=C(C(=NC1=O)N)C)S