Structural Complex
Chemical ID: PRD_002521
IUPAC Name: YBX-YC3-VAL-PRO-THR-THR-PHE-MAA-CYS-MN1 inhibitor
Formal Charge:
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CCc2cccc(c2)-c2ccccc2CSSC[C@@H](C(=O)N2CCCCC2)NC(=O)CNC(=O)[C@H](Cc2ccccc2)NC(=O)CNC(=O)CNC(=O)[C@@H]2CCCN2C(=O)CN1
InChI: InChI=1S/C46H56N8O8S2/c55-39-19-18-32-13-9-15-33(23-32)35-16-6-5-14-34(35)29-63-64-30-37(46(62)53-20-7-2-8-21-53)52-42(58)27-49-44(60)36(24-31-11-3-1-4-12-31)51-41(57)26-47-40(56)25-50-45(61)38-17-10-22-54(38)43(59)28-48-39/h1,3-6,9,11-16,23,36-38H,2,7-8,10,17-22,24-30H2,(H,47,56)(H,48,55)(H,49,60)(H,50,61)(H,51,57)(H,52,58)/t36-,37-,38-/m0/s1
InChI Key: CDKYGMXFXILSTI-QXUSSCGESA-N
Physiochemical Descriptor:
Formula: C60 H81 N9 O13 S3
Molecular weight: 1232.533
Hydrogen Bond Acceptor: 16
Hydrogen Bond Donor: 9
Rotatable Bonds: 20
Heavy Atoms: 85
Systematic name
Program Version Descriptor
ACDLabs 12.01 1-[(3aS,6R,9S,12R,15R,18S,26aM,33S,36R,38R)-12-benzyl-33-[2-(ethylsulfanyl)acetamido]-6-[(1R)-1-hydroxyethyl]-9-[(1S)-1-hydroxyethyl]-14,15-dimethyl-4,7,10,13,16,34,37-heptaoxo-36-(propan-2-yl)-1,2,3,3a,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,32,33,34,35,36,37-hexacosahydro-22H-27,31-(metheno)pyrrolo[2,1-t][2,3,6,9,12,15,18,21,24]benzodithiaheptaazacyclotetratriacontine-18-carbonyl]piperidine-4-carboxylic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C(O)C1CCN(CC1)C(=O)C1CSSCc2ccccc2c2cc(CC(NC(=O)CSCC)C(=O)NC(C(C)C)C(=O)N3CCCC3C(=O)NC(C(C)O)C(=O)NC(C(C)O)C(=O)NC(Cc3ccccc3)C(=O)N(C)C(C)C(=O)N1)ccc2
InChI InChI 1.06 InChI=1S/C60H81N9O13S3/c1-8-83-33-48(72)61-44-30-39-18-14-20-41(28-39)43-21-13-12-19-42(43)31-84-85-32-46(58(79)68-26-23-40(24-27-68)60(81)82)63-52(73)35(4)67(7)57(78)45(29-38-16-10-9-11-17-38)62-55(76)50(36(5)70)66-56(77)51(37(6)71)65-54(75)47-22-15-25-69(47)59(80)49(34(2)3)64-53(44)74/h9-14,16-21,28,34-37,40,44-47,49-51,70-71H,8,15,22-27,29-33H2,1-7H3,(H,61,72)(H,62,76)(H,63,73)(H,64,74)(H,65,75)(H,66,77)(H,81,82)/t35-,36+,37+,44-,45-,46-,47-,49-,50-,51-/m0/s1
InChIKey InChI 1.06 JKNTWIHXBRTJRL-PSOALBPRSA-N
SMILES_CANONICAL CACTVS 3.385 CCSCC(=O)N[C@H]1Cc2cccc(c2)c3ccccc3CSSC[C@H](NC(=O)[C@H](C)N(C)C(=O)[C@H](Cc4ccccc4)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H]5CCCN5C(=O)[C@@H](NC1=O)C(C)C)[C@@H](C)O)[C@@H](C)O)C(=O)N6CC[C@H](CC6)C(O)=O
SMILES CACTVS 3.385 CCSCC(=O)N[CH]1Cc2cccc(c2)c3ccccc3CSSC[CH](NC(=O)[CH](C)N(C)C(=O)[CH](Cc4ccccc4)NC(=O)[CH](NC(=O)[CH](NC(=O)[CH]5CCCN5C(=O)[CH](NC1=O)C(C)C)[CH](C)O)[CH](C)O)C(=O)N6CC[CH](CC6)C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CCSCC(=O)N[C@H]1Cc2cccc(c2)-c3ccccc3CSSC[C@H](NC(=O)[C@@H](N(C(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H]4CCCN4C(=O)[C@@H](NC1=O)C(C)C)[C@@H](C)O)[C@@H](C)O)Cc5ccccc5)C)C)C(=O)N6CCC(CC6)C(=O)O
SMILES OpenEye OEToolkits 2.0.7 CCSCC(=O)NC1Cc2cccc(c2)-c3ccccc3CSSCC(NC(=O)C(N(C(=O)C(NC(=O)C(NC(=O)C(NC(=O)C4CCCN4C(=O)C(NC1=O)C(C)C)C(C)O)C(C)O)Cc5ccccc5)C)C)C(=O)N6CCC(CC6)C(=O)O