Structural Complex
Chemical ID: XB3
IUPAC Name: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-([1,1'-biphenyl]-4-yl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1N=C2N(CCCCCO[PH](=O)O[PH](=O)OC[C@@H]3CC[C@H](n4cnc5cncnc54)O3)c3ccccc3N3CC[C@@H](c4ccc(-c5ccccc5)cc4)[C@@]23C(=O)N1
InChI: InChI=1S/C40H42N8O8P2/c49-38-40-31(29-15-13-28(14-16-29)27-9-3-1-4-10-27)19-21-48(40)34-12-6-5-11-33(34)46(37(40)44-39(50)45-38)20-7-2-8-22-53-57(51)56-58(52)54-24-30-17-18-35(55-30)47-26-43-32-23-41-25-42-36(32)47/h1,3-6,9-16,23,25-26,30-31,35,57-58H,2,7-8,17-22,24H2,(H,45,49,50)/t30-,31-,35+,40-/m0/s1
InChI Key: CTXJMYSAWBYLHX-NLLBLDHFSA-N
Physiochemical Descriptor:
Formula: C42 H47 N9 O16 P2
Molecular weight: 995.821
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 10
Rotatable Bonds: 26
Heavy Atoms: 69
Systematic name
Program Version Descriptor
ACDLabs 12.01 [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-([1,1'-biphenyl]-4-yl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 Cc1cc2c(cc1C)N1C(O)CC(c3ccc(cc3)c3ccccc3)C11C(=O)NC(=O)N=C1N2CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O
InChI InChI 1.06 InChI=1S/C42H47N9O16P2/c1-20-12-26-27(13-21(20)2)51-31(54)14-25(24-10-8-23(9-11-24)22-6-4-3-5-7-22)42(51)39(47-41(59)48-40(42)58)49(26)15-28(52)33(55)29(53)16-64-68(60,61)67-69(62,63)65-17-30-34(56)35(57)38(66-30)50-19-46-32-36(43)44-18-45-37(32)50/h3-13,18-19,25,28-31,33-35,38,52-57H,14-17H2,1-2H3,(H,60,61)(H,62,63)(H2,43,44,45)(H,48,58,59)/t25-,28-,29+,30+,31+,33-,34+,35+,38+,42-/m0/s1
InChIKey InChI 1.06 GILKOAUHLVTXHU-DRZNBKSLSA-N
SMILES_CANONICAL CACTVS 3.385 Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C@]67[C@@H](C[C@@H](O)N7c2cc1C)c8ccc(cc8)c9ccccc9
SMILES CACTVS 3.385 Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C]67[CH](C[CH](O)N7c2cc1C)c8ccc(cc8)c9ccccc9
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 Cc1cc2c(cc1C)N3[C@@H](C[C@H]([C@]34C(=O)NC(=O)N=C4N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9ccccc9)O
SMILES OpenEye OEToolkits 2.0.7 Cc1cc2c(cc1C)N3C(CC(C34C(=O)NC(=O)N=C4N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9ccccc9)O