Structural Complex
Chemical ID: KDO
IUPAC Name: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
Formal Charge: 0
Type: D-saccharide, alpha linking
Substructure
Substruture Type: MurckoScaffold
SMILES: C1CCOCC1
InChI: InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2
InChI Key: DHXVGJBLRPWPCS-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula: C8 H14 O8
Molecular weight: 238.192
Hydrogen Bond Acceptor: 8
Hydrogen Bond Donor: 6
Rotatable Bonds: 8
Heavy Atoms: 16
Systematic name
Program Version Descriptor
ACDLabs 10.04 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
OpenEye OEToolkits 1.5.0 (2R,4R,5R,6R)-6-[(1R)-1,2-dihydroxyethyl]-2,4,5-trihydroxy-oxane-2-carboxylic acid
GMML 1.0 DKdopa
PDB-CARE 1.0 a-D-Kdop
GMML 1.0 Kdo
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C(O)C1(O)OC(C(O)CO)C(O)C(O)C1
SMILES_CANONICAL CACTVS 3.341 OC[C@@H](O)[C@H]1O[C@](O)(C[C@@H](O)[C@H]1O)C(O)=O
SMILES CACTVS 3.341 OC[CH](O)[CH]1O[C](O)(C[CH](O)[CH]1O)C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1[C@H]([C@H]([C@H](O[C@]1(C(=O)O)O)[C@@H](CO)O)O)O
SMILES OpenEye OEToolkits 1.5.0 C1C(C(C(OC1(C(=O)O)O)C(CO)O)O)O
InChI InChI 1.03 InChI=1S/C8H14O8/c9-2-4(11)6-5(12)3(10)1-8(15,16-6)7(13)14/h3-6,9-12,15H,1-2H2,(H,13,14)/t3-,4-,5-,6-,8-/m1/s1
InChIKey InChI 1.03 NNLZBVFSCVTSLA-HXUQBWEZSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB03548
PubChem 445569
ChEBI 43577
ZINC ZINC000005851513