Structural Complex
Chemical ID: 56B
IUPAC Name: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
Formal Charge: 0
Type: RNA linking
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1c(CN[C@H]1C=CCC1)cn2[C@H]1CCCO1
InChI: InChI=1S/C16H20N4O2/c21-16-14-11(8-17-12-4-1-2-5-12)9-20(13-6-3-7-22-13)15(14)18-10-19-16/h1,4,9-10,12-13,17H,2-3,5-8H2,(H,18,19,21)/t12-,13+/m0/s1
InChI Key: FBGKYJFBLQTHNA-QWHCGFSZSA-N
Physiochemical Descriptor:
Formula: C17 H24 N5 O10 P
Molecular weight: 489.374
Hydrogen Bond Acceptor: 14
Hydrogen Bond Donor: 9
Rotatable Bonds: 14
Heavy Atoms: 33
Systematic name
Program Version Descriptor
ACDLabs 12.01 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
OpenEye OEToolkits 1.9.2 [(2R,3S,4R,5R)-5-[2-azanyl-5-[[[(1S,4S,5R)-4,5-bis(oxidanyl)cyclopent-2-en-1-yl]amino]methyl]-4-oxidanylidene-3H-pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 n2(cc(CNC1C(O)C(O)C=C1)c3c2N=C(N)NC3=O)C4C(O)C(O)C(O4)COP(=O)(O)O
InChI InChI 1.03 InChI=1S/C17H24N5O10P/c18-17-20-14-10(15(27)21-17)6(3-19-7-1-2-8(23)11(7)24)4-22(14)16-13(26)12(25)9(32-16)5-31-33(28,29)30/h1-2,4,7-9,11-13,16,19,23-26H,3,5H2,(H2,28,29,30)(H3,18,20,21,27)/t7-,8-,9+,11+,12+,13+,16+/m0/s1
InChIKey InChI 1.03 BSABGNSIPKXNDL-AEZJAUAXSA-N
SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(cc(CN[C@H]3C=C[C@H](O)[C@@H]3O)c2C(=O)N1)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O
SMILES CACTVS 3.385 NC1=Nc2n(cc(CN[CH]3C=C[CH](O)[CH]3O)c2C(=O)N1)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O
SMILES_CANONICAL OpenEye OEToolkits 1.9.2 c1c(c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=C(NC2=O)N)CN[C@H]4C=C[C@@H]([C@@H]4O)O
SMILES OpenEye OEToolkits 1.9.2 c1c(c2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N)CNC4C=CC(C4O)O
Chemical Database Mapping
Database Reference ID
PubChem 137348315
ZINC ZINC000584905107