Structural Complex
Chemical ID: PRD_002404
IUPAC Name: dynobactin A
Formal Charge:
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CCc2c[nH]c3cc(ccc23)C[C@@H](C(=O)NCC(=O)N[C@H]2Cc3cn(c[nH+]3)[C@H](c3ccccc3)[C@@H](C(=O)NCC(=O)NCCc3ccccc3)NC(=O)CNC2=O)NC(=O)CNC(=O)CN1
InChI: InChI=1S/C47H52N12O9/c60-37-14-12-31-20-49-34-17-29(11-13-33(31)34)18-35(56-40(63)23-51-39(62)21-50-37)45(66)52-24-41(64)57-36-19-32-26-59(27-55-32)44(30-9-5-2-6-10-30)43(58-42(65)25-53-46(36)67)47(68)54-22-38(61)48-16-15-28-7-3-1-4-8-28/h1-11,13,17,20,26-27,35-36,43-44,49H,12,14-16,18-19,21-25H2,(H,48,61)(H,50,60)(H,51,62)(H,52,66)(H,53,67)(H,54,68)(H,56,63)(H,57,64)(H,58,65)/p+1/t35-,36-,43-,44+/m0/s1
InChI Key: WEQYRZPFNWPQHO-UXMAKEHPSA-O
Physiochemical Descriptor:
Formula: C60 H78 N18 O16
Molecular weight: 1307.372
Hydrogen Bond Acceptor: 18
Hydrogen Bond Donor: 20
Rotatable Bonds: 28
Heavy Atoms: 94
Systematic name
Program Version Descriptor
OpenEye OEToolkits 3.1.0.0 [[[(4~{S})-4-[[(3~{S},6~{S},9~{S})-9-[[(2~{S})-2-[[(6~{S},9~{S},12~{S},15~{S})-16-aminocarbonyl-6-azanyl-9-(2-azanyl-2-oxidanylidene-ethyl)-12-(hydroxymethyl)-7,10,13-tris(oxidanylidene)-2,8,11,14-tetrazatricyclo[15.3.1.0^{4,20}]henicosa-1(20),3,17(21),18-tetraen-15-yl]carbonylamino]-3-methyl-butanoyl]amino]-6-(hydroxymethyl)-2-(4-hydroxyphenyl)-5,8-bis(oxidanylidene)-1,4,7-triaza-12-azoniabicyclo[9.2.1]tetradeca-11(14),12-dien-3-yl]carbonylamino]-5-oxidanylidene-5-[[(2~{S})-1-oxidanyl-1-oxidanylidene-3-phenyl-propan-2-yl]amino]pentyl]amino]-azanyl-methylidene]azanium
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.06 InChI=1S/C60H76N18O16/c1-27(2)45(75-57(91)46-44(49(63)83)30-12-15-34-31(22-67-37(34)19-30)18-35(61)50(84)70-39(21-43(62)82)53(87)74-41(24-79)54(88)76-46)56(90)71-38-20-32-23-78(26-68-32)48(29-10-13-33(81)14-11-29)47(77-55(89)42(25-80)73-52(38)86)58(92)69-36(9-6-16-66-60(64)65)51(85)72-40(59(93)94)17-28-7-4-3-5-8-28/h3-5,7-8,10-15,19,22-23,26-27,35-36,38-42,44-48,67,79-81H,6,9,16-18,20-21,24-25,61H2,1-2H3,(H2,62,82)(H2,63,83)(H,69,92)(H,70,84)(H,71,90)(H,72,85)(H,73,86)(H,74,87)(H,75,91)(H,76,88)(H,77,89)(H,93,94)(H4,64,65,66)/p+2/t35-,36-,38-,39-,40-,41-,42-,44+,45-,46-,47-,48+/m0/s1
InChIKey InChI 1.06 HWDDFJOGMWPPAS-GANBONKGSA-P
SMILES_CANONICAL CACTVS 3.385 CC(C)[C@H](NC(=O)[C@H]1NC(=O)[C@H](CO)NC(=O)[C@H](CC(N)=O)NC(=O)[C@@H](N)Cc2c[nH]c3cc(ccc23)[C@H]1C(N)=O)C(=O)N[C@H]4Cc5cn(c[nH+]5)[C@@H]([C@H](NC(=O)[C@H](CO)NC4=O)C(=O)N[C@@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](Cc6ccccc6)C(O)=O)c7ccc(O)cc7
SMILES CACTVS 3.385 CC(C)[CH](NC(=O)[CH]1NC(=O)[CH](CO)NC(=O)[CH](CC(N)=O)NC(=O)[CH](N)Cc2c[nH]c3cc(ccc23)[CH]1C(N)=O)C(=O)N[CH]4Cc5cn(c[nH+]5)[CH]([CH](NC(=O)[CH](CO)NC4=O)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](Cc6ccccc6)C(O)=O)c7ccc(O)cc7
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CC(C)[C@@H](C(=O)N[C@H]1Cc2cn(c[nH+]2)C([C@H](NC(=O)[C@@H](NC1=O)CO)C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](Cc3ccccc3)C(=O)O)c4ccc(cc4)O)NC(=O)[C@@H]5C(c6ccc7c(c6)[nH]cc7C[C@@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N5)CO)CC(=O)N)N)C(=O)N
SMILES OpenEye OEToolkits 2.0.7 CC(C)C(C(=O)NC1Cc2cn(c[nH+]2)C(C(NC(=O)C(NC1=O)CO)C(=O)NC(CCCNC(=[NH2+])N)C(=O)NC(Cc3ccccc3)C(=O)O)c4ccc(cc4)O)NC(=O)C5C(c6ccc7c(c6)[nH]cc7CC(C(=O)NC(C(=O)NC(C(=O)N5)CO)CC(=O)N)N)C(=O)N