Structural Complex
Chemical ID: YG4
IUPAC Name: [(2~{R},3~{R},4~{R},5~{R})-5-(6-azanyl-7,8-dihydropurin-9-yl)-2-[[[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-4-methoxy-oxolan-3-yl] [(2~{R},3~{S},4~{R},5~{S})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@@H]2CC[C@@H](CO[PH](=O)O[C@H]3C[C@H](N4CNc5cncnc54)O[C@@H]3CO[PH](=O)O[PH](=O)O[PH](=O)OC[C@@H]3CC[C@H](N4CNc5c4nc[nH]c5=O)O3)O2)c(=O)[nH]1
InChI: InChI=1S/C29H40N10O16P4/c40-21-5-6-37(29(42)36-21)22-3-1-16(50-22)9-47-56(43)53-19-7-24(39-14-34-18-8-30-12-31-26(18)39)52-20(19)11-49-58(45)55-59(46)54-57(44)48-10-17-2-4-23(51-17)38-15-35-25-27(38)32-13-33-28(25)41/h5-6,8,12-13,16-17,19-20,22-24,34-35,56-59H,1-4,7,9-11,14-15H2,(H,32,33,41)(H,36,40,42)/t16-,17-,19-,20+,22-,23+,24+/m0/s1
InChI Key: UMVCUTNRSZQXOO-LQYAQLHQSA-N
Physiochemical Descriptor:
Formula: C31 H46 N12 O25 P4
Molecular weight: 1110.657
Hydrogen Bond Acceptor: 35
Hydrogen Bond Donor: 13
Rotatable Bonds: 31
Heavy Atoms: 72
Systematic name
Program Version Descriptor
OpenEye OEToolkits 2.0.7 [(2~{R},3~{R},4~{R},5~{R})-5-(6-azanyl-7,8-dihydropurin-9-yl)-2-[[[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-4-methoxy-oxolan-3-yl] [(2~{R},3~{S},4~{R},5~{S})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.03 InChI=1S/C31H46N12O25P4/c1-40-10-43(25-16(40)26(49)39-30(33)38-25)28-20(48)18(46)12(64-28)6-61-70(53,54)67-72(57,58)68-71(55,56)62-7-13-21(22(59-2)29(65-13)42-9-36-15-23(32)34-8-35-24(15)42)66-69(51,52)60-5-11-17(45)19(47)27(63-11)41-4-3-14(44)37-31(41)50/h3-4,8,11-13,17-22,27-29,36,45-48H,5-7,9-10H2,1-2H3,(H,51,52)(H,53,54)(H,55,56)(H,57,58)(H2,32,34,35)(H,37,44,50)(H3,33,38,39,49)/t11-,12-,13-,17-,18-,19-,20-,21-,22-,27+,28-,29-/m1/s1
InChIKey InChI 1.03 POOGENYSODSFCS-SWDLWUBYSA-N
SMILES_CANONICAL CACTVS 3.385 CO[C@@H]1[C@H](O[P](O)(=O)OC[C@H]2O[C@@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)N5CN(C)C6=C5N=C(N)NC6=O)O[C@H]1N7CNc8c(N)ncnc78
SMILES CACTVS 3.385 CO[CH]1[CH](O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)N5CN(C)C6=C5N=C(N)NC6=O)O[CH]1N7CNc8c(N)ncnc78
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CN1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5CNc6c5ncnc6N)OC)OP(=O)(O)OC[C@@H]7[C@H]([C@H]([C@H](O7)N8C=CC(=O)NC8=O)O)O)O)O
SMILES OpenEye OEToolkits 2.0.7 CN1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CNc6c5ncnc6N)OC)OP(=O)(O)OCC7C(C(C(O7)N8C=CC(=O)NC8=O)O)O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 155923781