ISDA: 6YMJ

Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: CBV

IUPAC Name: 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

Formal Charge: 0

Type: RNA LINKING

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1ncccn1[C@H]1CCCO1

InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1

InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N

Physiochemical Descriptor:

Formula: C9 H13 Br N3 O8 P

Molecular weight: 402.093

Hydrogen Bond Acceptor: 11

Hydrogen Bond Donor: 5

Rotatable Bonds: 9

Heavy Atoms: 22

Systematic name

Program	Version	Descriptor
ACDLabs	10.04	5-bromocytidine 5'-(dihydrogen phosphate)
OpenEye OEToolkits	1.5.0	[(2R,3S,4R,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O)N
SMILES_CANONICAL	CACTVS	3.341	NC1=NC(=O)N(C=C1Br)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES	CACTVS	3.341	NC1=NC(=O)N(C=C1Br)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
SMILES_CANONICAL	OpenEye OEToolkits	1.5.0	C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)Br
SMILES	OpenEye OEToolkits	1.5.0	C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)Br
InChI	InChI	1.03	InChI=1S/C9H13BrN3O8P/c10-3-1-13(9(16)12-7(3)11)8-6(15)5(14)4(21-8)2-20-22(17,18)19/h1,4-6,8,14-15H,2H2,(H2,11,12,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1
InChIKey	InChI	1.03	KOHPTSGPCYTYFB-UAKXSSHOSA-N

Chemical Database Mapping