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Structural Complex
Chemical ID: OYW
IUPAC Name: 4-Cl-Bn7GpppG mRNA 5' cap analog
Formal Charge: 1
Type: RNA linking
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H](n3c[n+](Cc4ccccc4)c4c(=O)[nH]cnc43)O2)O1
InChI: InChI=1S/C27H31N8O11P3/c36-26-22-24(28-13-30-26)34(15-32-22)20-8-6-18(43-20)11-41-47(38)45-49(40)46-48(39)42-12-19-7-9-21(44-19)35-16-33(10-17-4-2-1-3-5-17)23-25(35)29-14-31-27(23)37/h1-5,13-16,18-21,47-49H,6-12H2,(H-,28,29,30,31,36,37)/p+1/t18-,19-,20+,21+/m0/s1
InChI Key: XJXMVQAYSHNOAN-UWHLTILDSA-O
Physiochemical Descriptor:
Formula: C27 H33 Cl N10 O18 P3
Molecular weight: 913.981
Hydrogen Bond Acceptor: 25
Hydrogen Bond Donor: 11
Rotatable Bonds: 23
Heavy Atoms: 59
Systematic name
Program Version Descriptor
OpenEye OEToolkits 2.0.7 [[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(4-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.03 InChI=1S/C27H32ClN10O18P3/c28-11-3-1-10(2-4-11)5-36-9-38(21-15(36)23(44)35-27(30)33-21)25-19(42)17(40)13(54-25)7-52-58(47,48)56-59(49,50)55-57(45,46)51-6-12-16(39)18(41)24(53-12)37-8-31-14-20(37)32-26(29)34-22(14)43/h1-4,8-9,12-13,16-19,24-25,39-42H,5-7H2,(H8-,29,30,32,33,34,35,43,44,45,46,47,48,49,50)/p+1/t12?,13-,16?,17-,18?,19-,24?,25-/m1/s1
InChIKey InChI 1.03 YLIRYFJCSIVXAE-AGNUKMHHSA-O
SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5c[n+](Cc6ccc(Cl)cc6)c7C(=O)NC(=Nc57)N)C(O)C3O
SMILES CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5c[n+](Cc6ccc(Cl)cc6)c7C(=O)NC(=Nc57)N)C(O)C3O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O)Cl
SMILES OpenEye OEToolkits 2.0.7 c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O)Cl
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