ISDA: 6XBO

Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: 5MC

IUPAC Name: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE

Formal Charge: 0

Type: RNA LINKING

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1ncccn1[C@H]1CCCO1

InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1

InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N

Physiochemical Descriptor:

Formula: C10 H16 N3 O8 P

Molecular weight: 337.223

Hydrogen Bond Acceptor: 11

Hydrogen Bond Donor: 5

Rotatable Bonds: 10

Heavy Atoms: 22

Systematic name

Program	Version	Descriptor
ACDLabs	10.04	5-methylcytidine 5'-(dihydrogen phosphate)
OpenEye OEToolkits	1.5.0	[(2R,3S,4R,5R)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C1N=C(N)C(=CN1C2OC(C(O)C2O)COP(=O)(O)O)C
SMILES_CANONICAL	CACTVS	3.341	CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N=C1N
SMILES	CACTVS	3.341	CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N=C1N
SMILES_CANONICAL	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
SMILES	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)O
InChI	InChI	1.03	InChI=1S/C10H16N3O8P/c1-4-2-13(10(16)12-8(4)11)9-7(15)6(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14-15H,3H2,1H3,(H2,11,12,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1
InChIKey	InChI	1.03	NJQONZSFUKNYOY-JXOAFFINSA-N

Chemical Database Mapping