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Summary
Structure Feature
Experiment
Ligands & Environment
6VJF
pdb_00006vjf
10.2210/pdb6vjf/pdb
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FASTA
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MMCIF
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Structure Factors
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GCP
MG
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
GCP
IUPAC Name:
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Formal Charge:
0
Type:
NON-POLYMER
Substructure
Substruture Type:
MurckoScaffold
SMILES:
O=c1[nH]cnc2c1ncn2[C@H]1CCCO1
InChI:
InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1
InChI Key:
JBXHFRZBULGPSC-ZCFIWIBFSA-N
Physiochemical Descriptor:
Formula:
C11 H18 N5 O13 P3
Molecular weight:
521.208
Hydrogen Bond Acceptor:
17
Hydrogen Bond Donor:
8
Rotatable Bonds:
15
Heavy Atoms:
32
Systematic name
Program
Version
Descriptor
ACDLabs
10.04
5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]oxy}phosphoryl]guanosine
OpenEye OEToolkits
1.5.0
[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methylphosphonic acid
Chemical Descriptors
Type
Program
Version
Descriptor
SMILES
ACDLabs
10.04
O=P(O)(O)CP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
SMILES_CANONICAL
CACTVS
3.341
NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES
CACTVS
3.341
NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O
SMILES_CANONICAL
OpenEye OEToolkits
1.5.0
c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N
SMILES
OpenEye OEToolkits
1.5.0
c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N
InChI
InChI
1.03
InChI=1S/C11H18N5O13P3/c12-11-14-8-5(9(19)15-11)13-2-16(8)10-7(18)6(17)4(28-10)1-27-32(25,26)29-31(23,24)3-30(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1
InChIKey
InChI
1.03
PHBDHXOBFUBCJD-KQYNXXCUSA-N
Chemical Database Mapping
Database
Reference ID
DrugBank
DB03725
PubChem
135398731
ChEBI
1963
ZINC
ZINC000008220535
SureChEMBL
SCHEMBL196559
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