Structural Complex
Chemical ID: NKM
IUPAC Name: (2~{S},3~{S},4~{S})-2-[(1~{R})-2-azanyl-1-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-methoxy-4-oxidanyl-oxolan-2-yl]-2-oxidanylidene-ethoxy]-3,4-bis(oxidanyl)-~{N}-[(3~{S})-2-oxidanylideneazepan-3-yl]-3,4-dihydro-2~{H}-pyran-6-carboxamide
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(N[C@H]1CCCCNC1=O)C1=CCC[C@@H](OC[C@@H]2CC[C@H](n3ccc(=O)[nH]c3=O)O2)O1
InChI: InChI=1S/C21H28N4O7/c26-16-9-11-25(21(29)24-16)17-8-7-13(31-17)12-30-18-6-3-5-15(32-18)20(28)23-14-4-1-2-10-22-19(14)27/h5,9,11,13-14,17-18H,1-4,6-8,10,12H2,(H,22,27)(H,23,28)(H,24,26,29)/t13-,14-,17+,18-/m0/s1
InChI Key: LMXQOVKFWDMOLW-ZZCKCESHSA-N
Physiochemical Descriptor:
Formula: C23 H31 N5 O12
Molecular weight: 569.519
Hydrogen Bond Acceptor: 13
Hydrogen Bond Donor: 7
Rotatable Bonds: 12
Heavy Atoms: 40
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2S,3S,4S)-2-{(1R)-2-amino-1-[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-3-methoxytetrahydrofuran-2-yl]-2-oxoethoxy}-3,4-dihydroxy-N-[(3S)-2-oxoazepan-3-yl]-3,4-dihydro-2H-pyran-6-carboxamide (non-preferred name)
OpenEye OEToolkits 2.0.7 (2~{S},3~{S},4~{S})-2-[(1~{R})-2-azanyl-1-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-methoxy-4-oxidanyl-oxolan-2-yl]-2-oxidanylidene-ethoxy]-3,4-bis(oxidanyl)-~{N}-[(3~{S})-2-oxidanylideneazepan-3-yl]-3,4-dihydro-2~{H}-pyran-6-carboxamide
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C1(OC(=CC(O)C1O)C(=O)NC2CCCCNC2=O)OC(C4C(C(C(N3C=CC(=O)NC3=O)O4)O)OC)C(=O)N
InChI InChI 1.03 InChI=1S/C23H31N5O12/c1-37-15-14(32)21(28-7-5-12(30)27-23(28)36)39-16(15)17(18(24)33)40-22-13(31)10(29)8-11(38-22)20(35)26-9-4-2-3-6-25-19(9)34/h5,7-10,13-17,21-22,29,31-32H,2-4,6H2,1H3,(H2,24,33)(H,25,34)(H,26,35)(H,27,30,36)/t9-,10-,13-,14+,15-,16-,17+,21+,22+/m0/s1
InChIKey InChI 1.03 BISOEENGZHMDEO-RLXIHFJVSA-N
SMILES_CANONICAL CACTVS 3.385 CO[C@H]1[C@@H](O)[C@@H](O[C@@H]1[C@@H](O[C@H]2OC(=C[C@H](O)[C@@H]2O)C(=O)N[C@H]3CCCCNC3=O)C(N)=O)N4C=CC(=O)NC4=O
SMILES CACTVS 3.385 CO[CH]1[CH](O)[CH](O[CH]1[CH](O[CH]2OC(=C[CH](O)[CH]2O)C(=O)N[CH]3CCCCNC3=O)C(N)=O)N4C=CC(=O)NC4=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CO[C@H]1[C@H]([C@@H](O[C@@H]1[C@H](C(=O)N)O[C@@H]2[C@H]([C@H](C=C(O2)C(=O)N[C@H]3CCCCNC3=O)O)O)N4C=CC(=O)NC4=O)O
SMILES OpenEye OEToolkits 2.0.7 COC1C(C(OC1C(C(=O)N)OC2C(C(C=C(O2)C(=O)NC3CCCCNC3=O)O)O)N4C=CC(=O)NC4=O)O
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL96695
PubChem 5487121
ZINC ZINC000026672118
SureChEMBL SCHEMBL14598937