Structural Complex
Chemical ID: NK4
IUPAC Name: (5S)-5'-O-(5-amino-5-deoxy-beta-D-ribofuranosyl)-5'-C-[(2S,5S,6S)-5-carboxy-6-heptadecyl-1,4-dimethyl-3-oxo-1,4-diazepan-2-yl]uridine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1NCCCN[C@H]1[C@H](O[C@H]1CCCO1)[C@@H]1CC[C@H](n2ccc(=O)[nH]c2=O)O1
InChI: InChI=1S/C18H26N4O6/c23-12-6-9-22(18(25)21-12)13-5-4-11(27-13)16(28-14-3-1-10-26-14)15-17(24)20-8-2-7-19-15/h6,9,11,13-16,19H,1-5,7-8,10H2,(H,20,24)(H,21,23,25)/t11-,13+,14-,15-,16+/m0/s1
InChI Key: GPFUVWQSLFEDRD-YPUPRDRTSA-N
Physiochemical Descriptor:
Formula: C39 H67 N5 O12
Molecular weight: 797.976
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 7
Rotatable Bonds: 31
Heavy Atoms: 56
Systematic name
Program Version Descriptor
ACDLabs 12.01 (5S)-5'-O-(5-amino-5-deoxy-beta-D-ribofuranosyl)-5'-C-[(2S,5S,6S)-5-carboxy-6-heptadecyl-1,4-dimethyl-3-oxo-1,4-diazepan-2-yl]uridine
OpenEye OEToolkits 2.0.7 (2~{S},5~{S},6~{S})-2-[(~{S})-[(2~{S},3~{R},4~{S},5~{R})-5-(aminomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-6-heptadecyl-1,4-dimethyl-3-oxidanylidene-1,4-diazepane-5-carboxylic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C1(CN)C(C(O)C(O1)OC(C2N(CC(CCCCCCCCCCCCCCCCC)C(C(O)=O)N(C)C2=O)C)C4C(C(C(N3C(NC(C=C3)=O)=O)O4)O)O)O
InChI InChI 1.03 InChI=1S/C39H67N5O12/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-24-23-42(2)28(35(50)43(3)27(24)37(51)52)33(56-38-32(49)29(46)25(22-40)54-38)34-30(47)31(48)36(55-34)44-21-20-26(45)41-39(44)53/h20-21,24-25,27-34,36,38,46-49H,4-19,22-23,40H2,1-3H3,(H,51,52)(H,41,45,53)/t24-,25+,27-,28-,29+,30-,31+,32+,33-,34-,36+,38-/m0/s1
InChIKey InChI 1.03 GERCPLXZNIROKC-PUWYXTMPSA-N
SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCCCCC[C@H]1CN(C)[C@@H]([C@H](O[C@@H]2O[C@H](CN)[C@@H](O)[C@H]2O)[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)C(=O)N(C)[C@@H]1C(O)=O
SMILES CACTVS 3.385 CCCCCCCCCCCCCCCCC[CH]1CN(C)[CH]([CH](O[CH]2O[CH](CN)[CH](O)[CH]2O)[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)C(=O)N(C)[CH]1C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCCCCCC[C@H]1CN([C@H](C(=O)N([C@@H]1C(=O)O)C)[C@@H]([C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O[C@H]4[C@@H]([C@@H]([C@H](O4)CN)O)O)C
SMILES OpenEye OEToolkits 2.0.7 CCCCCCCCCCCCCCCCCC1CN(C(C(=O)N(C1C(=O)O)C)C(C2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)OC4C(C(C(O4)CN)O)O)C
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL4466734
PubChem 56593455