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Summary
Structure Feature
Experiment
Ligands & Environment
6H76
pdb_00006h76
10.2210/pdb6h76/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
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FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
CL
CS
SLB
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
SLB
IUPAC Name:
N-acetyl-beta-neuraminic acid
Formal Charge:
0
Type:
D-saccharide, beta linking
Substructure
Substruture Type:
MurckoScaffold
SMILES:
C1CCOCC1
InChI:
InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2
InChI Key:
DHXVGJBLRPWPCS-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula:
C11 H19 N O9
Molecular weight:
309.270
Hydrogen Bond Acceptor:
9
Hydrogen Bond Donor:
7
Rotatable Bonds:
11
Heavy Atoms:
21
Systematic name
Program
Version
Descriptor
ACDLabs
10.04
5-(acetylamino)-3,5-dideoxy-D-glycero-beta-D-galacto-non-2-ulopyranosonic acid
OpenEye OEToolkits
1.5.0
(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid
GMML
1.0
DNeup5Acb
GMML
1.0
N-acetyl-b-D-neuraminic acid
PDB-CARE
1.0
b-D-Neup5Ac
GMML
1.0
Neu5Ac
Chemical Descriptors
Type
Program
Version
Descriptor
SMILES
ACDLabs
10.04
O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1
SMILES_CANONICAL
CACTVS
3.341
CC(=O)N[C@@H]1[C@@H](O)C[C@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
SMILES
CACTVS
3.341
CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
SMILES_CANONICAL
OpenEye OEToolkits
1.5.0
CC(=O)N[C@@H]1[C@H](C[C@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O
SMILES
OpenEye OEToolkits
1.5.0
CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O
InChI
InChI
1.03
InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,7+,8+,9+,11-/m0/s1
InChIKey
InChI
1.03
SQVRNKJHWKZAKO-PFQGKNLYSA-N
Chemical Database Mapping
Database
Reference ID
DrugBank
DB04265
ChEMBL
CHEMBL165084
PubChem
445063
ChEBI
45744
ZINC
ZINC000003793840
SureChEMBL
SCHEMBL22412
HMDB
HMDB0000230
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