Structural Complex
Chemical ID: J2B
IUPAC Name: O-[(1R,2R,3R)-5-{[(S)-{[(2R,3R,4R,5R)-2-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydro furan-3-yl]oxy}(sulfanyl)phosphoryl]oxy}-1-(6-amino-9H-purin-9-yl)-1,2-dihydroxypentan-3-yl] dihydrogen (R)-phosphorothioate
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1nc[nH]c2c1ncn2[C@@H]1OCC[C@H]1O[PH](=O)OCCCCCn1cnc2cncnc21
InChI: InChI=1S/C19H23N8O5P/c28-18-15-17(22-10-23-18)27(12-25-15)19-14(4-7-30-19)32-33(29)31-6-3-1-2-5-26-11-24-13-8-20-9-21-16(13)26/h8-12,14,19,33H,1-7H2,(H,22,23,28)/t14-,19-/m1/s1
InChI Key: IKFJVKFFOPCIPX-AUUYWEPGSA-N
Physiochemical Descriptor:
Formula: C20 H28 N10 O12 P2 S2
Molecular weight: 726.574
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 10
Rotatable Bonds: 22
Heavy Atoms: 46
Systematic name
Program Version Descriptor
ACDLabs 12.01 O-[(1R,2R,3R)-5-{[(S)-{[(2R,3R,4R,5R)-2-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl]oxy}(sulfanyl)phosphoryl]oxy}-1-(6-amino-9H-purin-9-yl)-1,2-dihydroxypentan-3-yl] dihydrogen (R)-phosphorothioate (non-preferred name)
OpenEye OEToolkits 2.0.6 [(1~{R},2~{R},3~{R})-1-(6-aminopurin-9-yl)-5-[[(2~{R},3~{R},4~{R},5~{R})-2-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxy-1,2-bis(oxidanyl)pentan-3-yl]oxy-sulfanyl-phosphinic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C3(C(C(n2c1c(C(N=C(N1)N)=O)nc2)OC3CO)OP(OCCC(C(C(n5c4c(c(ncn4)N)nc5)O)O)OP(=O)(O)S)(=O)S)O
InChI InChI 1.03 InChI=1S/C20H28N10O12P2S2/c21-14-9-15(24-4-23-14)29(5-25-9)18(35)12(33)7(41-43(36,37)45)1-2-39-44(38,46)42-13-11(32)8(3-31)40-19(13)30-6-26-10-16(30)27-20(22)28-17(10)34/h4-8,11-13,18-19,31-33,35H,1-3H2,(H,38,46)(H2,21,23,24)(H2,36,37,45)(H3,22,27,28,34)/t7-,8-,11-,12-,13-,18-,19-,44+/m1/s1
InChIKey InChI 1.03 WDMUGQSSXDUMIY-MHPWAGLLSA-N
SMILES_CANONICAL CACTVS 3.385 NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O[P@](S)(=O)OCC[C@@H](O[P](O)(S)=O)[C@@H](O)[C@@H](O)n4cnc5c(N)ncnc45)c2N1
SMILES CACTVS 3.385 NC1=NC(=O)c2ncn([CH]3O[CH](CO)[CH](O)[CH]3O[P](S)(=O)OCC[CH](O[P](O)(S)=O)[CH](O)[CH](O)n4cnc5c(N)ncnc45)c2N1
SMILES_CANONICAL OpenEye OEToolkits 2.0.6 c1nc(c2c(n1)n(cn2)[C@@H]([C@@H]([C@@H](CCO[P@@](=O)(O[C@@H]3[C@@H]([C@H](O[C@H]3n4cnc5c4NC(=NC5=O)N)CO)O)S)OP(=O)(O)S)O)O)N
SMILES OpenEye OEToolkits 2.0.6 c1nc(c2c(n1)n(cn2)C(C(C(CCOP(=O)(OC3C(C(OC3n4cnc5c4NC(=NC5=O)N)CO)O)S)OP(=O)(O)S)O)O)N
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