Structural Complex
Chemical ID: VC8
IUPAC Name: 4-amino-1-{2-deoxy-5-O-[(R)-{[(R)-[dichloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-L-threo-pentofuranosyl}pyrimidin-2(1H)-one
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C10 H16 Cl2 N3 O12 P3
Molecular weight: 534.074
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 6
Rotatable Bonds: 14
Heavy Atoms: 30
Systematic name
Program Version Descriptor
ACDLabs 12.01 4-amino-1-{2-deoxy-5-O-[(R)-{[(R)-[dichloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-L-threo-pentofuranosyl}pyrimidin-2(1H)-one
OpenEye OEToolkits 2.0.6 [[[[(2~{S},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]-bis(chloranyl)methyl]phosphonic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C=1(N)C=CN(C(N=1)=O)C2OC(C(C2)O)COP(=O)(O)OP(O)(C(Cl)(P(O)(O)=O)Cl)=O
InChI InChI 1.03 InChI=1S/C10H16Cl2N3O12P3/c11-10(12,28(18,19)20)29(21,22)27-30(23,24)25-4-6-5(16)3-8(26-6)15-2-1-7(13)14-9(15)17/h1-2,5-6,8,16H,3-4H2,(H,21,22)(H,23,24)(H2,13,14,17)(H2,18,19,20)/t5-,6-,8+/m0/s1
InChIKey InChI 1.03 UVMWAJJREHNIPG-VMHSAVOQSA-N
SMILES_CANONICAL CACTVS 3.385 NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@H](CO[P](O)(=O)O[P](O)(=O)C(Cl)(Cl)[P](O)(O)=O)O2
SMILES CACTVS 3.385 NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)C(Cl)(Cl)[P](O)(O)=O)O2
SMILES_CANONICAL OpenEye OEToolkits 2.0.6 C1[C@@H]([C@@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Cl)Cl)O)O
SMILES OpenEye OEToolkits 2.0.6 C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Cl)Cl)O)O
Chemical Database Mapping
Database Reference ID
PubChem 134163702