Structural Complex
Chemical ID: 9RC
IUPAC Name: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)Oc3ccccc3)O2)c(=O)[nH]1
InChI: InChI=1S/C15H17N2O6P/c18-13-8-9-17(15(19)16-13)14-7-6-12(22-14)10-21-24(20)23-11-4-2-1-3-5-11/h1-5,8-9,12,14,24H,6-7,10H2,(H,16,18,19)/t12-,14+/m0/s1
InChI Key: MHOCVBIYPKJBGN-GXTWGEPZSA-N
Physiochemical Descriptor:
Formula: C16 H18 N3 O10 P
Molecular weight: 443.302
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 3
Rotatable Bonds: 10
Heavy Atoms: 30
Systematic name
Program Version Descriptor
ACDLabs 12.01 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine
OpenEye OEToolkits 2.0.6 [(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl (4-nitrophenyl) hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C1NC(=O)C(C)=CN1C2CC(O)C(O2)COP(Oc3ccc([N+]([O-])=O)cc3)(=O)O
InChI InChI 1.03 InChI=1S/C16H18N3O10P/c1-9-7-18(16(22)17-15(9)21)14-6-12(20)13(28-14)8-27-30(25,26)29-11-4-2-10(3-5-11)19(23)24/h2-5,7,12-14,20H,6,8H2,1H3,(H,25,26)(H,17,21,22)/t12-,13+,14+/m0/s1
InChIKey InChI 1.03 RWOAVOYBVRQNIZ-BFHYXJOUSA-N
SMILES_CANONICAL CACTVS 3.385 CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)Oc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O
SMILES CACTVS 3.385 CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)Oc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.6 CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)Oc3ccc(cc3)[N+](=O)[O-])O
SMILES OpenEye OEToolkits 2.0.6 CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)Oc3ccc(cc3)[N+](=O)[O-])O
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL596169
PubChem 164953
ChEBI 74144
ZINC ZINC000013520531
SureChEMBL SCHEMBL8428624