Structural Complex
Chemical ID: 6FM
IUPAC Name: 2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)
Formal Charge: 0
Type: DNA linking
Substructure
Substruture Type: MurckoScaffold
SMILES: c1ncc2ncn([C@H]3CCCO3)c2n1
InChI: InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1
InChI Key: DAKONNSVCLKUJN-MRVPVSSYSA-N
Physiochemical Descriptor:
Formula: C12 H13 F N5 O6 P
Molecular weight: 373.234
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 4
Rotatable Bonds: 8
Heavy Atoms: 25
Systematic name
Program Version Descriptor
ACDLabs 12.01 2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)
OpenEye OEToolkits 2.0.4 [(2~{R},3~{S},5~{R})-5-(6-azanyl-2-fluoranyl-purin-9-yl)-2-ethynyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 c21n(cnc1c(nc(n2)F)N)C3CC(C(C#C)(O3)COP(O)(=O)O)O
InChI InChI 1.03 InChI=1S/C12H13FN5O6P/c1-2-12(4-23-25(20,21)22)6(19)3-7(24-12)18-5-15-8-9(14)16-11(13)17-10(8)18/h1,5-7,19H,3-4H2,(H2,14,16,17)(H2,20,21,22)/t6-,7+,12+/m0/s1
InChIKey InChI 1.03 MAIQRKKYFLNZMS-QRPMWFLTSA-N
SMILES_CANONICAL CACTVS 3.385 Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@](CO[P](O)(O)=O)(O3)C#C
SMILES CACTVS 3.385 Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[C](CO[P](O)(O)=O)(O3)C#C
SMILES_CANONICAL OpenEye OEToolkits 2.0.4 C#C[C@]1([C@H](C[C@@H](O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)O
SMILES OpenEye OEToolkits 2.0.4 C#CC1(C(CC(O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)O
Chemical Database Mapping
Database Reference ID
PubChem 121238099
ZINC ZINC000584904743