Structural Complex
Chemical ID: Y6W
IUPAC Name: [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)CCC[C@@H]3CCCCO3)O2)c(=O)[nH]1
InChI: InChI=1S/C17H27N2O6P/c20-15-8-9-19(17(21)18-15)16-7-6-14(25-16)12-24-26(22)11-3-5-13-4-1-2-10-23-13/h8-9,13-14,16,26H,1-7,10-12H2,(H,18,20,21)/t13-,14-,16+/m0/s1
InChI Key: XBXGRIXXGKBDLD-OFQRWUPVSA-N
Physiochemical Descriptor:
Formula: C18 H29 N2 O13 P
Molecular weight: 512.402
Hydrogen Bond Acceptor: 14
Hydrogen Bond Donor: 8
Rotatable Bonds: 16
Heavy Atoms: 34
Systematic name
Program Version Descriptor
ACDLabs 12.01 [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate (non-preferred name)
OpenEye OEToolkits 1.7.6 [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[3-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]propyl]phosphinic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C1(OC(C(C(C1O)O)O)CO)CCCP(OCC3C(C(C(N2C(=O)NC(C=C2)=O)O3)O)O)(O)=O
InChI InChI 1.03 InChI=1S/C18H29N2O13P/c21-6-9-13(24)15(26)12(23)8(32-9)2-1-5-34(29,30)31-7-10-14(25)16(27)17(33-10)20-4-3-11(22)19-18(20)28/h3-4,8-10,12-17,21,23-27H,1-2,5-7H2,(H,29,30)(H,19,22,28)/t8-,9-,10-,12+,13+,14-,15-,16-,17-/m1/s1
InChIKey InChI 1.03 PDUJCKZVDKZKPQ-RUIRHDHUSA-N
SMILES_CANONICAL CACTVS 3.385 OC[C@H]1O[C@H](CCC[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@@H](O)[C@H]1O
SMILES CACTVS 3.385 OC[CH]1O[CH](CCC[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(CCC[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O
SMILES OpenEye OEToolkits 1.7.6 C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(CCCC3C(C(C(C(O3)CO)O)O)O)O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 118796367
ZINC ZINC000584905745