Structural Complex
Chemical ID: 2QR
IUPAC Name: (2R,3R,4S,5S)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]tetrahydro-2H-pyr an-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CC[C@@H](NCc4ccncc4)CO3)O2)c(=O)[nH]1
InChI: InChI=1S/C20H28N4O9P2/c25-17-7-10-24(20(26)23-17)18-3-2-16(31-18)13-30-34(27)33-35(28)32-19-4-1-15(12-29-19)22-11-14-5-8-21-9-6-14/h5-10,15-16,18-19,22,34-35H,1-4,11-13H2,(H,23,25,26)/t15-,16+,18-,19-/m1/s1
InChI Key: RYDVEOUZADSODY-UKBAYJJMSA-N
Physiochemical Descriptor:
Formula: C22 H33 N4 O20 P3
Molecular weight: 766.434
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 11
Rotatable Bonds: 24
Heavy Atoms: 49
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2R,3R,4S,5S)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
OpenEye OEToolkits 1.7.6 [[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5S)-5-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC4OCC(NCc3c(cnc(c3O)C)COP(=O)(O)O)C(O)C4O)O)O
InChI InChI 1.03 InChI=1S/C22H33N4O20P3/c1-9-15(28)11(10(4-23-9)6-42-47(34,35)36)5-24-12-7-41-21(19(32)16(12)29)45-49(39,40)46-48(37,38)43-8-13-17(30)18(31)20(44-13)26-3-2-14(27)25-22(26)33/h2-4,12-13,16-21,24,28-32H,5-8H2,1H3,(H,37,38)(H,39,40)(H,25,27,33)(H2,34,35,36)/t12-,13+,16-,17+,18+,19+,20+,21+/m0/s1
InChIKey InChI 1.03 SNDXWZNPMTZYQI-LLAQWDROSA-N
SMILES_CANONICAL CACTVS 3.385 Cc1ncc(CO[P](O)(O)=O)c(CN[C@H]2CO[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H](O)[C@H]2O)c1O
SMILES CACTVS 3.385 Cc1ncc(CO[P](O)(O)=O)c(CN[CH]2CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH](O)[CH]2O)c1O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H]2CO[C@@H]([C@@H]([C@H]2O)O)OP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)O
SMILES OpenEye OEToolkits 1.7.6 Cc1c(c(c(cn1)COP(=O)(O)O)CNC2COC(C(C2O)O)OP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 137348075
ZINC ZINC000098208240