Structural Complex
Chemical ID: PUP
IUPAC Name: (2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-({[(S)-hydroxy{[(2R,3S,4S)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl]oxy}phosphoryl]oxy}methyl)tetrahydrofuran-3-yl dihydrogen phosphate
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[C@H]3CCOC3)O2)c(=O)[nH]1
InChI: InChI=1S/C13H19N2O7P/c16-11-3-5-15(13(17)14-11)12-2-1-9(21-12)8-20-23(18)22-10-4-6-19-7-10/h3,5,9-10,12,23H,1-2,4,6-8H2,(H,14,16,17)/t9-,10-,12+/m0/s1
InChI Key: FXQKWDVDFZWUNP-JBLDHEPKSA-N
Physiochemical Descriptor:
Formula: C14 H22 N2 O15 P2
Molecular weight: 520.276
Hydrogen Bond Acceptor: 16
Hydrogen Bond Donor: 7
Rotatable Bonds: 15
Heavy Atoms: 33
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-({[(S)-hydroxy{[(2R,3S,4S)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl]oxy}phosphoryl]oxy}methyl)tetrahydrofuran-3-yl dihydrogen phosphate (non-preferred name)
OpenEye OEToolkits 1.7.6 [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl [(2R,3S,4S)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(OC1C(O)COC1CO)(O)OCC3OC(N2C(=O)NC(=O)C=C2)C(O)C3OP(=O)(O)O
InChI InChI 1.03 InChI=1S/C14H22N2O15P2/c17-3-7-11(6(18)4-27-7)31-33(25,26)28-5-8-12(30-32(22,23)24)10(20)13(29-8)16-2-1-9(19)15-14(16)21/h1-2,6-8,10-13,17-18,20H,3-5H2,(H,25,26)(H,15,19,21)(H2,22,23,24)/t6-,7+,8+,10+,11-,12+,13+/m0/s1
InChIKey InChI 1.03 CTEYAHSJKMGMOL-HHUJUQMJSA-N
SMILES_CANONICAL CACTVS 3.385 OC[C@H]1OC[C@H](O)[C@@H]1O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O[P](O)(O)=O)N3C=CC(=O)NC3=O
SMILES CACTVS 3.385 OC[CH]1OC[CH](O)[CH]1O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O[P](O)(O)=O)N3C=CC(=O)NC3=O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C1[C@@H]([C@@H]([C@H](O1)CO)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)OP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.7.6 C1C(C(C(O1)CO)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)OP(=O)(O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 73167577
ZINC ZINC000098209323