Structural Complex
Chemical ID: 0R6
IUPAC Name: 2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncc(C#Cc2ccccc2)cn1[C@H]1CCCO1
InChI: InChI=1S/C16H14N2O2/c19-16-17-11-14(9-8-13-5-2-1-3-6-13)12-18(16)15-7-4-10-20-15/h1-3,5-6,11-12,15H,4,7,10H2/t15-/m1/s1
InChI Key: TVKPBUBTRZILPK-OAHLLOKOSA-N
Physiochemical Descriptor:
Formula: C19 H20 N3 O13 P3
Molecular weight: 591.296
Hydrogen Bond Acceptor: 16
Hydrogen Bond Donor: 6
Rotatable Bonds: 14
Heavy Atoms: 38
Systematic name
Program Version Descriptor
ACDLabs 12.01 2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
OpenEye OEToolkits 1.7.6 [[(2R,3S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=O)N=C(N)C(C#Cc1ccc(C#C)cc1)=C2)CC3O
InChI InChI 1.03 InChI=1S/C19H20N3O13P3/c1-2-12-3-5-13(6-4-12)7-8-14-10-22(19(24)21-18(14)20)17-9-15(23)16(33-17)11-32-37(28,29)35-38(30,31)34-36(25,26)27/h1,3-6,10,15-17,23H,9,11H2,(H,28,29)(H,30,31)(H2,20,21,24)(H2,25,26,27)/t15-,16+,17+/m0/s1
InChIKey InChI 1.03 CPJFKEBWOPVPDF-GVDBMIGSSA-N
SMILES_CANONICAL CACTVS 3.370 NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
SMILES CACTVS 3.370 NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.7.6 C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 137347883
ZINC ZINC000098207852