Structural Complex
Chemical ID: JB3
IUPAC Name: GDP-N-acetylperosamine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]2CCCCO2)O1
InChI: InChI=1S/C15H22N4O8P2/c20-15-13-14(16-8-17-15)19(9-18-13)11-5-4-10(25-11)7-24-28(21)27-29(22)26-12-3-1-2-6-23-12/h8-12,28-29H,1-7H2,(H,16,17,20)/t10-,11+,12+/m0/s1
InChI Key: DAYKFFOVCHXBSL-QJPTWQEYSA-N
Physiochemical Descriptor:
Formula: C18 H28 N6 O15 P2
Molecular weight: 630.394
Hydrogen Bond Acceptor: 19
Hydrogen Bond Donor: 9
Rotatable Bonds: 18
Heavy Atoms: 41
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2R,3S,4S,5S,6R)-5-(acetylamino)-3,4-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
OpenEye OEToolkits 1.7.6 [(2R,3S,4S,5S,6R)-5-acetamido-6-methyl-3,4-bis(oxidanyl)oxan-2-yl] [[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C4NC(=Nc1c4ncn1C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(NC(=O)C)C(O)C3O)C)O)O)N
InChI InChI 1.03 InChI=1S/C18H28N6O15P2/c1-5-8(21-6(2)25)11(27)13(29)17(36-5)38-41(33,34)39-40(31,32)35-3-7-10(26)12(28)16(37-7)24-4-20-9-14(24)22-18(19)23-15(9)30/h4-5,7-8,10-13,16-17,26-29H,3H2,1-2H3,(H,21,25)(H,31,32)(H,33,34)(H3,19,22,23,30)/t5-,7-,8-,10-,11+,12-,13+,16-,17-/m1/s1
InChIKey InChI 1.03 QYYLCPNKZRMSFL-XEDXKBCUSA-N
SMILES_CANONICAL CACTVS 3.370 C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N)[C@@H](O)[C@@H](O)[C@@H]1NC(C)=O
SMILES CACTVS 3.370 C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N)[CH](O)[CH](O)[CH]1NC(C)=O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)NC(=O)C
SMILES OpenEye OEToolkits 1.7.6 CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)NC(=O)C
Chemical Database Mapping
Database Reference ID
PubChem 135566714
ChEBI 74047
ZINC ZINC000096095135
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