Structural Complex
Chemical ID: VWN
IUPAC Name: 2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-morpholin-4-ylpyrimidin-4(3H)-one
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1cc(N2CCOCC2)nc(Cc2nc3ccccc3[nH]2)[nH]1
InChI: InChI=1S/C16H17N5O2/c22-16-10-15(21-5-7-23-8-6-21)19-14(20-16)9-13-17-11-3-1-2-4-12(11)18-13/h1-4,10H,5-9H2,(H,17,18)(H,19,20,22)
InChI Key: ZXWKRHZKUQDVJE-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula: C17 H19 N5 O2
Molecular weight: 325.365
Hydrogen Bond Acceptor: 6
Hydrogen Bond Donor: 1
Rotatable Bonds: 4
Heavy Atoms: 24
Systematic name
Program Version Descriptor
ACDLabs 12.01 2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-(morpholin-4-yl)pyrimidin-4(3H)-one
OpenEye OEToolkits 1.9.2 2-[(1-methylbenzimidazol-2-yl)methyl]-4-morpholin-4-yl-1H-pyrimidin-6-one
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C1C=C(N=C(N1)Cc3nc2ccccc2n3C)N4CCOCC4
InChI InChI 1.03 InChI=1S/C17H19N5O2/c1-21-13-5-3-2-4-12(13)18-15(21)10-14-19-16(11-17(23)20-14)22-6-8-24-9-7-22/h2-5,11H,6-10H2,1H3,(H,19,20,23)
InChIKey InChI 1.03 XLESLWHDVUIEMT-UHFFFAOYSA-N
SMILES_CANONICAL CACTVS 3.385 Cn1c(CC2=NC(=CC(=O)N2)N3CCOCC3)nc4ccccc14
SMILES CACTVS 3.385 Cn1c(CC2=NC(=CC(=O)N2)N3CCOCC3)nc4ccccc14
SMILES_CANONICAL OpenEye OEToolkits 1.9.2 Cn1c2ccccc2nc1CC3=NC(=CC(=O)N3)N4CCOCC4
SMILES OpenEye OEToolkits 1.9.2 Cn1c2ccccc2nc1CC3=NC(=CC(=O)N3)N4CCOCC4
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL2064330
PubChem 135566644
ZINC ZINC000084727627
SureChEMBL SCHEMBL931309