Structural Complex
Chemical ID: G1C
IUPAC Name: 5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CCCO1
InChI: InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1
InChI Key: JBXHFRZBULGPSC-ZCFIWIBFSA-N
Physiochemical Descriptor:
Formula: C11 H17 Cl N5 O12 P3
Molecular weight: 539.653
Hydrogen Bond Acceptor: 16
Hydrogen Bond Donor: 7
Rotatable Bonds: 14
Heavy Atoms: 32
Systematic name
Program Version Descriptor
ACDLabs 11.02 5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine
OpenEye OEToolkits 1.6.1 [(S)-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-chloro-methyl]phosphonic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 11.02 O=P(O)(O)C(Cl)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O
SMILES_CANONICAL CACTVS 3.352 NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@@H](Cl)[P](O)(O)=O)O3
SMILES CACTVS 3.352 NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](Cl)[P](O)(O)=O)O3
SMILES_CANONICAL OpenEye OEToolkits 1.7.0 c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)([C@H](P(=O)(O)O)Cl)O)O)N=C(NC2=O)N
SMILES OpenEye OEToolkits 1.7.0 c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N
InChI InChI 1.03 InChI=1S/C11H17ClN5O12P3/c12-10(30(20,21)22)31(23,24)29-32(25,26)27-2-5-4(18)1-6(28-5)17-3-14-7-8(17)15-11(13)16-9(7)19/h3-6,10,18H,1-2H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t4-,5+,6+,10-/m0/s1
InChIKey InChI 1.03 GBPRSSRXOIDBNV-KQQCLRPBSA-N
Chemical Database Mapping
Database Reference ID
PubChem 135566490
ZINC ZINC000058650330