Structural Complex
Chemical ID: U4S
IUPAC Name: 1-(5-deoxy-5-pyrrolidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@H](CN3CCCC3)O2)c(=O)[nH]1
InChI: InChI=1S/C13H19N3O3/c17-11-5-8-16(13(18)14-11)12-4-3-10(19-12)9-15-6-1-2-7-15/h5,8,10,12H,1-4,6-7,9H2,(H,14,17,18)/t10-,12-/m1/s1
InChI Key: XNWGTRJIDKQINJ-ZYHUDNBSSA-N
Physiochemical Descriptor:
Formula: C13 H19 N3 O5
Molecular weight: 297.307
Hydrogen Bond Acceptor: 7
Hydrogen Bond Donor: 3
Rotatable Bonds: 5
Heavy Atoms: 21
Systematic name
Program Version Descriptor
ACDLabs 10.04 1-(5-deoxy-5-pyrrolidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
OpenEye OEToolkits 1.5.0 1-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(pyrrolidin-1-ylmethyl)oxolan-2-yl]pyrimidine-2,4-dione
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CN3CCCC3
SMILES_CANONICAL CACTVS 3.341 O[C@@H]1[C@@H](O)[C@@H](O[C@H]1CN2CCCC2)N3C=CC(=O)NC3=O
SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CN2CCCC2)N3C=CC(=O)NC3=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1CCN(C1)C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O
SMILES OpenEye OEToolkits 1.5.0 C1CCN(C1)CC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O
InChI InChI 1.03 InChI=1S/C13H19N3O5/c17-9-3-6-16(13(20)14-9)12-11(19)10(18)8(21-12)7-15-4-1-2-5-15/h3,6,8,10-12,18-19H,1-2,4-5,7H2,(H,14,17,20)/t8-,10-,11+,12+/m0/s1
InChIKey InChI 1.03 RPODXOXNOBCNGM-OHBODLIOSA-N
Chemical Database Mapping
Database Reference ID
PubChem 25147493
ZINC ZINC000058649356