Structural Complex
Chemical ID: U3S
IUPAC Name: 1-(5-deoxy-5-piperidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@H](CN3CCCCC3)O2)c(=O)[nH]1
InChI: InChI=1S/C14H21N3O3/c18-12-6-9-17(14(19)15-12)13-5-4-11(20-13)10-16-7-2-1-3-8-16/h6,9,11,13H,1-5,7-8,10H2,(H,15,18,19)/t11-,13-/m1/s1
InChI Key: HJBRCQZLAYGKAX-DGCLKSJQSA-N
Physiochemical Descriptor:
Formula: C14 H21 N3 O5
Molecular weight: 311.334
Hydrogen Bond Acceptor: 7
Hydrogen Bond Donor: 3
Rotatable Bonds: 5
Heavy Atoms: 22
Systematic name
Program Version Descriptor
ACDLabs 10.04 1-(5-deoxy-5-piperidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
OpenEye OEToolkits 1.5.0 1-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(piperidin-1-ylmethyl)oxolan-2-yl]pyrimidine-2,4-dione
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CN3CCCCC3
SMILES_CANONICAL CACTVS 3.341 O[C@@H]1[C@@H](O)[C@@H](O[C@H]1CN2CCCCC2)N3C=CC(=O)NC3=O
SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CN2CCCCC2)N3C=CC(=O)NC3=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1CCN(CC1)C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O
SMILES OpenEye OEToolkits 1.5.0 C1CCN(CC1)CC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O
InChI InChI 1.03 InChI=1S/C14H21N3O5/c18-10-4-7-17(14(21)15-10)13-12(20)11(19)9(22-13)8-16-5-2-1-3-6-16/h4,7,9,11-13,19-20H,1-3,5-6,8H2,(H,15,18,21)/t9-,11-,12+,13+/m0/s1
InChIKey InChI 1.03 PJCAMYRNNJAIMT-FTYKPCCVSA-N
Chemical Database Mapping
Database Reference ID
PubChem 25147491
ZINC ZINC000058639054