ISDA: 3BSN

Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: N5C

IUPAC Name: 5-nitrocytidine 5'-(tetrahydrogen triphosphate)

Formal Charge: 0

Type: NON-POLYMER

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1ncccn1[C@H]1CCCO1

InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1

InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N

Physiochemical Descriptor:

Formula: C9 H15 N4 O16 P3

Molecular weight: 528.154

Hydrogen Bond Acceptor: 19

Hydrogen Bond Donor: 7

Rotatable Bonds: 16

Heavy Atoms: 32

Systematic name

Program	Version	Descriptor
ACDLabs	10.04	5-nitrocytidine 5'-(tetrahydrogen triphosphate)
OpenEye OEToolkits	1.5.0	[(2R,3S,4R,5R)-5-(4-amino-5-nitro-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C([N+]([O-])=O)=C1)C(O)C2O
SMILES_CANONICAL	CACTVS	3.341	NC1=NC(=O)N(C=C1[N+]([O-])=O)[C@@H]2O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES	CACTVS	3.341	NC1=NC(=O)N(C=C1[N+]([O-])=O)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O
SMILES_CANONICAL	OpenEye OEToolkits	1.5.0	C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N)[N+](=O)[O-]
SMILES	OpenEye OEToolkits	1.5.0	C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N)[N+](=O)[O-]
InChI	InChI	1.03	InChI=1S/C9H15N4O16P3/c10-7-3(13(17)18)1-12(9(16)11-7)8-6(15)5(14)4(27-8)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h1,4-6,8,14-15H,2H2,(H,22,23)(H,24,25)(H2,10,11,16)(H2,19,20,21)/t4-,5-,6-,8-/m1/s1
InChIKey	InChI	1.03	FDSJHYVWUMETJX-UAKXSSHOSA-N

Chemical Database Mapping