Structural Complex
Chemical ID: TYU
IUPAC Name: TETRAHYDROURIDINE
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1NCCCN1[C@H]1CCCO1
InChI: InChI=1S/C8H14N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h7H,1-6H2,(H,9,11)/t7-/m1/s1
InChI Key: NKXJQKKCVCYDCH-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C9 H16 N2 O6
Molecular weight: 248.233
Hydrogen Bond Acceptor: 6
Hydrogen Bond Donor: 5
Rotatable Bonds: 6
Heavy Atoms: 17
Systematic name
Program Version Descriptor
ACDLabs 10.04 (4R)-4-hydroxy-1-beta-D-ribofuranosyltetrahydropyrimidin-2(1H)-one
OpenEye OEToolkits 1.5.0 (4R)-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-1,3-diazinan-2-one
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1N(CCC(O)N1)C2OC(C(O)C2O)CO
SMILES_CANONICAL CACTVS 3.341 OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2CC[C@@H](O)NC2=O
SMILES CACTVS 3.341 OC[CH]1O[CH]([CH](O)[CH]1O)N2CC[CH](O)NC2=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1CN(C(=O)N[C@@H]1O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
SMILES OpenEye OEToolkits 1.5.0 C1CN(C(=O)NC1O)C2C(C(C(O2)CO)O)O
InChI InChI 1.03 InChI=1S/C9H16N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h4-8,12-15H,1-3H2,(H,10,16)/t4-,5-,6-,7-,8-/m1/s1
InChIKey InChI 1.03 UCKYOOZPSJFJIZ-FMDGEEDCSA-N
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL1236475
PubChem 9543506
ZINC ZINC000001703948
SureChEMBL SCHEMBL172272