Structural Complex
Chemical ID: CH
IUPAC Name: N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
Formal Charge: 1
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]ccc[n+]1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/p+1/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-O
Physiochemical Descriptor:
Formula: C9 H15 N3 O8 P
Molecular weight: 324.204
Hydrogen Bond Acceptor: 9
Hydrogen Bond Donor: 6
Rotatable Bonds: 9
Heavy Atoms: 21
Systematic name
Program Version Descriptor
ACDLabs 10.04 5'-cytidylic acid
OpenEye OEToolkits 1.5.0 [(2R,3S,4R,5R)-5-(4-amino-2-oxo-3H-pyrimidin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1NC(N)=CC=[N+]1C2OC(C(O)C2O)COP(=O)(O)O
SMILES_CANONICAL CACTVS 3.341 NC1=CC=[N+]([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N1
SMILES CACTVS 3.341 NC1=CC=[N+]([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N1
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1=C(NC(=O)[N+](=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N
SMILES OpenEye OEToolkits 1.5.0 C1=C(NC(=O)[N+](=C1)C2C(C(C(O2)COP(=O)(O)O)O)O)N
InChI InChI 1.03 InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H4,10,11,15,16,17,18)/p+1/t4-,6-,7-,8-/m1/s1
InChIKey InChI 1.03 ULTJSGLMABORQB-XVFCMESISA-O
Chemical Database Mapping
Database Reference ID
PubChem 49822695
ZINC ZINC000103536411