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Summary
Structure Feature
Experiment
Ligands & Environment
2VCA
pdb_00002vca
10.2210/pdb2vca/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
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FASTA Zipped(.gz)
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CA
GOL
NAG
SO4
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
NAG
IUPAC Name:
2-acetamido-2-deoxy-beta-D-glucopyranose
Formal Charge:
0
Type:
D-saccharide, beta linking
Substructure
Substruture Type:
MurckoScaffold
SMILES:
C1CCOCC1
InChI:
InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2
InChI Key:
DHXVGJBLRPWPCS-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula:
C8 H15 N O6
Molecular weight:
221.208
Hydrogen Bond Acceptor:
6
Hydrogen Bond Donor:
5
Rotatable Bonds:
7
Heavy Atoms:
15
Systematic name
Program
Version
Descriptor
ACDLabs
12.01
2-(acetylamino)-2-deoxy-beta-D-glucopyranose
OpenEye OEToolkits
1.7.6
N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide
GMML
1.0
DGlcpNAcb
GMML
1.0
N-acetyl-b-D-glucopyranosamine
PDB-CARE
1.0
b-D-GlcpNAc
GMML
1.0
GlcNAc
Chemical Descriptors
Type
Program
Version
Descriptor
SMILES
ACDLabs
12.01
O=C(NC1C(O)C(O)C(OC1O)CO)C
InChI
InChI
1.03
InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1
InChIKey
InChI
1.03
OVRNDRQMDRJTHS-FMDGEEDCSA-N
SMILES_CANONICAL
CACTVS
3.370
CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O
SMILES
CACTVS
3.370
CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O
SMILES_CANONICAL
OpenEye OEToolkits
1.7.6
CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O
SMILES
OpenEye OEToolkits
1.7.6
CC(=O)NC1C(C(C(OC1O)CO)O)O
Chemical Database Mapping
Database
Reference ID
ChEMBL
CHEMBL447878
PubChem
24139
ChEBI
28009
ZINC
ZINC000003983907
SureChEMBL
SCHEMBL19345
HMDB
HMDB0000803
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