Structural Complex
Chemical ID: V12
IUPAC Name: 5'-[(1H-BENZIMIDAZOL-2-YLACETYL)AMINO]-5'-DEOXYCYTIDINE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(Cc1nc2ccccc2[nH]1)NC[C@@H]1CC[C@H](n2cccnc2=O)O1
InChI: InChI=1S/C18H19N5O3/c24-16(10-15-21-13-4-1-2-5-14(13)22-15)20-11-12-6-7-17(26-12)23-9-3-8-19-18(23)25/h1-5,8-9,12,17H,6-7,10-11H2,(H,20,24)(H,21,22)/t12-,17+/m0/s1
InChI Key: JVPUCDAEEJCNPK-YVEFUNNKSA-N
Physiochemical Descriptor:
Formula: C18 H20 N6 O5
Molecular weight: 400.389
Hydrogen Bond Acceptor: 9
Hydrogen Bond Donor: 5
Rotatable Bonds: 8
Heavy Atoms: 29
Systematic name
Program Version Descriptor
ACDLabs 10.04 5'-[(1H-benzimidazol-2-ylacetyl)amino]-5'-deoxycytidine
OpenEye OEToolkits 1.5.0 N-[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-2-(1H-benzimidazol-2-yl)ethanamide
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1N=C(N)C=CN1C2OC(C(O)C2O)CNC(=O)Cc3nc4ccccc4n3
SMILES_CANONICAL CACTVS 3.341 NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CNC(=O)Cc3[nH]c4ccccc4n3)[C@@H](O)[C@H]2O
SMILES CACTVS 3.341 NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)Cc3[nH]c4ccccc4n3)[CH](O)[CH]2O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 c1ccc2c(c1)[nH]c(n2)CC(=O)NC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=NC4=O)N)O)O
SMILES OpenEye OEToolkits 1.5.0 c1ccc2c(c1)[nH]c(n2)CC(=O)NCC3C(C(C(O3)N4C=CC(=NC4=O)N)O)O
InChI InChI 1.03 InChI=1S/C18H20N6O5/c19-12-5-6-24(18(28)23-12)17-16(27)15(26)11(29-17)8-20-14(25)7-13-21-9-3-1-2-4-10(9)22-13/h1-6,11,15-17,26-27H,7-8H2,(H,20,25)(H,21,22)(H2,19,23,28)/t11-,15-,16-,17-/m1/s1
InChIKey InChI 1.03 MMCWRTZSCVUETH-GAEVZRCVSA-N
Chemical Database Mapping
Database Reference ID
PubChem 16129592
ZINC ZINC000016052575
Feedback Form
Name
Email
Institute
Feedback