Structural Complex
Chemical ID: CSF
IUPAC Name: CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CC[C@@H](CO[PH](=O)OC2CCCCO2)O1
InChI: InChI=1S/C14H21N2O6P/c17-14-15-7-3-8-16(14)12-6-5-11(21-12)10-20-23(18)22-13-4-1-2-9-19-13/h3,7-8,11-13,23H,1-2,4-6,9-10H2/t11-,12+,13?/m0/s1
InChI Key: VJVCWMJKEPRTCF-LAGVYOHYSA-N
Physiochemical Descriptor:
Formula: C20 H30 F N4 O16 P
Molecular weight: 632.442
Hydrogen Bond Acceptor: 19
Hydrogen Bond Donor: 10
Rotatable Bonds: 20
Heavy Atoms: 42
Systematic name
Program Version Descriptor
ACDLabs 10.04 (2S,3R,4R,5R,6R)-5-(acetylamino)-2-{[(R)-{[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}-3-fluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
OpenEye OEToolkits 1.5.0 (3R,4R,5R,6R)-5-acetamido-2-[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-fluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 FC3C(O)C(NC(=O)C)C(OC3(OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2O)C(=O)O)C(O)C(O)CO
SMILES_CANONICAL CACTVS 3.341 CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@](O[C@H]1[C@H](O)[C@H](O)CO)(O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N)C(O)=O
SMILES CACTVS 3.341 CC(=O)N[CH]1[CH](O)[CH](F)[C](O[CH]1[CH](O)[CH](O)CO)(O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N)C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CC(=O)N[C@@H]1[C@H]([C@H](C(O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)F)O
SMILES OpenEye OEToolkits 1.5.0 CC(=O)NC1C(C(C(OC1C(C(CO)O)O)(C(=O)O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)F)O
InChI InChI 1.03 InChI=1S/C20H30FN4O16P/c1-6(27)23-10-13(31)16(21)20(18(33)34,40-15(10)11(29)7(28)4-26)41-42(36,37)38-5-8-12(30)14(32)17(39-8)25-3-2-9(22)24-19(25)35/h2-3,7-8,10-17,26,28-32H,4-5H2,1H3,(H,23,27)(H,33,34)(H,36,37)(H2,22,24,35)/t7-,8-,10-,11-,12-,13-,14-,15-,16-,17-,20-/m1/s1
InChIKey InChI 1.03 HNJLGUNKGJTPBF-JTKQZVQZSA-N
Chemical Database Mapping
Database Reference ID
PubChem 4369303
ZINC ZINC000024734081