Structural Complex
Chemical ID: 2AA
IUPAC Name: 5'-O-{[({[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]OXY}PHOSPHINATO)OXY]PHOSPHINATO}CYT
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)OCCNS(=O)(=O)c2cccc3ccccc23)O1
InChI: InChI=1S/C21H25N3O9P2S/c25-21-22-11-4-13-24(21)20-10-9-17(32-20)15-31-35(27)33-34(26)30-14-12-23-36(28,29)19-8-3-6-16-5-1-2-7-18(16)19/h1-8,11,13,17,20,23,34-35H,9-10,12,14-15H2/t17-,20+/m0/s1
InChI Key: ZSRYMSQXHBABJM-FXAWDEMLSA-N
Physiochemical Descriptor:
Formula: C23 H31 N5 O13 P2 S
Molecular weight: 679.530
Hydrogen Bond Acceptor: 17
Hydrogen Bond Donor: 6
Rotatable Bonds: 20
Heavy Atoms: 44
Systematic name
Program Version Descriptor
ACDLabs 10.04 5'-O-[(S)-{[(R)-[2-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)ethoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine
OpenEye OEToolkits 1.5.0 [[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 2-[(5-dimethylaminonaphthalen-1-yl)sulfonylamino]ethyl hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=S(=O)(c2c1cccc(N(C)C)c1ccc2)NCCOP(=O)(O)OP(=O)(O)OCC4OC(N3C(=O)N=C(N)C=C3)C(O)C4O
InChI InChI 1.03 InChI=1S/C23H31N5O13P2S/c1-27(2)16-7-3-6-15-14(16)5-4-8-18(15)44(36,37)25-10-12-38-42(32,33)41-43(34,35)39-13-17-20(29)21(30)22(40-17)28-11-9-19(24)26-23(28)31/h3-9,11,17,20-22,25,29-30H,10,12-13H2,1-2H3,(H,32,33)(H,34,35)(H2,24,26,31)/t17-,20-,21-,22-/m1/s1
InChIKey InChI 1.03 OXPWLEWKRGQJQO-BRKWEVRTSA-N
SMILES_CANONICAL CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=NC4=O)N
SMILES CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=NC4=O)N
SMILES_CANONICAL OpenEye OEToolkits 1.7.5 CN(C)c1cccc2c1cccc2S(=O)(=O)NCCO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=NC4=O)N)O)O
SMILES OpenEye OEToolkits 1.7.5 CN(C)c1cccc2c1cccc2S(=O)(=O)NCCOP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=NC4=O)N)O)O
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL1229873
PubChem 6102719
ZINC ZINC000058633195