Structural Complex
Chemical ID: DDN
IUPAC Name: 3,4-DIHYDRO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Formal Charge: 0
Type: DNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1NCC=CN1[C@H]1CCCO1
InChI: InChI=1S/C8H12N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,5,7H,1,3-4,6H2,(H,9,11)/t7-/m1/s1
InChI Key: IYKVEGJCEUSHDD-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C9 H15 N2 O8 P
Molecular weight: 310.198
Hydrogen Bond Acceptor: 8
Hydrogen Bond Donor: 5
Rotatable Bonds: 8
Heavy Atoms: 20
Systematic name
Program Version Descriptor
ACDLabs 10.04 (4R)-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one
OpenEye OEToolkits 1.5.0 [(2R,3S,5R)-3-hydroxy-5-[(4R)-4-hydroxy-2-oxo-3,4-dihydropyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1NC(O)C=CN1C2OC(C(O)C2)COP(=O)(O)O
SMILES_CANONICAL CACTVS 3.341 O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C[C@@H](O)NC2=O
SMILES CACTVS 3.341 O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C[CH](O)NC2=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1[C@@H]([C@H](O[C@H]1N2C=C[C@H](NC2=O)O)COP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.5.0 C1C(C(OC1N2C=CC(NC2=O)O)COP(=O)(O)O)O
InChI InChI 1.03 InChI=1S/C9H15N2O8P/c12-5-3-8(11-2-1-7(13)10-9(11)14)19-6(5)4-18-20(15,16)17/h1-2,5-8,12-13H,3-4H2,(H,10,14)(H2,15,16,17)/t5-,6+,7+,8+/m0/s1
InChIKey InChI 1.03 ILSIYJVILUIVPM-LXGUWJNJSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB04280
PubChem 449076
ZINC ZINC000005850864