Structural Complex
Chemical ID: PRD_000204
IUPAC Name: Vancomycin
Formal Charge:
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CCc2ccc(cc2)Oc2cc3cc(c2O[C@@H]2OCCC[C@H]2O[C@H]2CCCCO2)Oc2ccc(cc2)C[C@@H]2NC(=O)[C@H](NC(=O)[C@@H]3NC(=O)CN1)c1cccc(c1)-c1ccccc1CNC2=O
InChI: InChI=1S/C53H53N5O11/c59-44-22-17-31-13-18-37(19-14-31)66-42-27-36-28-43(49(42)69-53-41(11-6-24-65-53)68-46-12-3-4-23-64-46)67-38-20-15-32(16-21-38)25-40-50(61)55-29-35-7-1-2-10-39(35)33-8-5-9-34(26-33)47(51(62)56-40)58-52(63)48(36)57-45(60)30-54-44/h1-2,5,7-10,13-16,18-21,26-28,40-41,46-48,53H,3-4,6,11-12,17,22-25,29-30H2,(H,54,59)(H,55,61)(H,56,62)(H,57,60)(H,58,63)/t40-,41+,46-,47+,48+,53-/m0/s1
InChI Key: IDTGHDZOJFRYNS-RNGSZDOWSA-N
Physiochemical Descriptor:
Formula: C66 H75 Cl2 N9 O24
Molecular weight: 1449.254
Hydrogen Bond Acceptor: 26
Hydrogen Bond Donor: 19
Rotatable Bonds: 28
Heavy Atoms: 101
Systematic name
Program Version Descriptor
ACDLabs 12.01 (1S,2R,18R,19R,22S,25R,28R,33P,40S)-48-{[(2S,3R,4S,5S,6R)-3-{[(2S,4S,5S,6S)-4-amino-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-22-(2-amino-2-oxoethyl)-5,15-dichloro-2,18,32,35,37-pentahydroxy-19-{[(2R)-4-methyl-2-(methylamino)pentanoyl]amino}-20,23,26,42,44-pentaoxo-7,13-dioxa-21,24,27,41,43-pentaazaoctacyclo[26.14.2.2~3,6~.2~14,17~.1~8,12~.1~29,33~.0~10,25~.0~34,39~]pentaconta-3,5,8(48),9,11,14,16,29(45),30,32,34,36,38,46,49-pentadecaene-40-carboxylic acid (non-preferred name)
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C(O)C1NC(=O)C2NC(=O)C(NC(=O)C3NC(=O)C(CC(N)=O)NC(=O)C(NC(=O)C(CC(C)C)NC)C(O)c4ccc(Oc5cc3cc(Oc3ccc(cc3Cl)C2O)c5OC2OC(CO)C(O)C(O)C2OC2CC(C)(N)C(O)C(C)O2)c(Cl)c4)c2ccc(O)c(c2)c2c(O)cc(O)cc21
InChI InChI 1.03 InChI=1S/C66H75Cl2N9O24/c1-23(2)12-34(71-5)58(88)76-49-51(83)26-7-10-38(32(67)14-26)97-40-16-28-17-41(55(40)101-65-56(54(86)53(85)42(22-78)99-65)100-44-21-66(4,70)57(87)24(3)96-44)98-39-11-8-27(15-33(39)68)52(84)50-63(93)75-48(64(94)95)31-18-29(79)19-37(81)45(31)30-13-25(6-9-36(30)80)46(60(90)77-50)74-61(91)47(28)73-59(89)35(20-43(69)82)72-62(49)92/h6-11,13-19,23-24,34-35,42,44,46-54,56-57,65,71,78-81,83-87H,12,20-22,70H2,1-5H3,(H2,69,82)(H,72,92)(H,73,89)(H,74,91)(H,75,93)(H,76,88)(H,77,90)(H,94,95)/t24-,34+,35-,42+,44-,46+,47+,48-,49+,50-,51+,52+,53+,54-,56+,57+,65-,66-/m0/s1
InChIKey InChI 1.03 MYPYJXKWCTUITO-LYRMYLQWSA-N
SMILES_CANONICAL CACTVS 3.385 CN[C@H](CC(C)C)C(=O)N[C@@H]1[C@H](O)c2ccc(Oc3cc4cc(Oc5ccc(cc5Cl)[C@@H](O)[C@@H]6NC(=O)[C@H](NC(=O)[C@@H]4NC(=O)[C@H](CC(N)=O)NC1=O)c7ccc(O)c(c7)c8c(O)cc(O)cc8[C@H](NC6=O)C(O)=O)c3O[C@@H]9O[C@H](CO)[C@@H](O)[C@H](O)[C@H]9O[C@H]%10C[C@](C)(N)[C@H](O)[C@H](C)O%10)c(Cl)c2
SMILES CACTVS 3.385 CN[CH](CC(C)C)C(=O)N[CH]1[CH](O)c2ccc(Oc3cc4cc(Oc5ccc(cc5Cl)[CH](O)[CH]6NC(=O)[CH](NC(=O)[CH]4NC(=O)[CH](CC(N)=O)NC1=O)c7ccc(O)c(c7)c8c(O)cc(O)cc8[CH](NC6=O)C(O)=O)c3O[CH]9O[CH](CO)[CH](O)[CH](O)[CH]9O[CH]%10C[C](C)(N)[CH](O)[CH](C)O%10)c(Cl)c2
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 C[C@H]1[C@H]([C@@](C[C@@H](O1)O[C@@H]2[C@H]([C@@H]([C@H](O[C@H]2Oc3c4cc5cc3Oc6ccc(cc6Cl)[C@H]([C@H](C(=O)N[C@H](C(=O)N[C@H]5C(=O)N[C@@H]7c8ccc(c(c8)-c9c(cc(cc9O)O)[C@H](NC(=O)[C@H]([C@@H](c1ccc(c(c1)Cl)O4)O)NC7=O)C(=O)O)O)CC(=O)N)NC(=O)[C@@H](CC(C)C)NC)O)CO)O)O)(C)N)O
SMILES OpenEye OEToolkits 2.0.7 CC1C(C(CC(O1)OC2C(C(C(OC2Oc3c4cc5cc3Oc6ccc(cc6Cl)C(C(C(=O)NC(C(=O)NC5C(=O)NC7c8ccc(c(c8)-c9c(cc(cc9O)O)C(NC(=O)C(C(c1ccc(c(c1)Cl)O4)O)NC7=O)C(=O)O)O)CC(=O)N)NC(=O)C(CC(C)C)NC)O)CO)O)O)(C)N)O
Chemical Database Mapping
Database Reference ID
DrugBank DB00512
ChEMBL CHEMBL262777
PubChem 14969
ChEBI 28001
SureChEMBL SCHEMBL3177
HMDB HMDB0014653