Structural Complex
Chemical ID: GDR
IUPAC Name: GUANOSINE-5'-DIPHOSPHATE-RHAMNOSE
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]2CCCCO2)O1
InChI: InChI=1S/C15H22N4O8P2/c20-15-13-14(16-8-17-15)19(9-18-13)11-5-4-10(25-11)7-24-28(21)27-29(22)26-12-3-1-2-6-23-12/h8-12,28-29H,1-7H2,(H,16,17,20)/t10-,11+,12+/m0/s1
InChI Key: DAYKFFOVCHXBSL-QJPTWQEYSA-N
Physiochemical Descriptor:
Formula: C16 H25 N5 O15 P2
Molecular weight: 589.342
Hydrogen Bond Acceptor: 19
Hydrogen Bond Donor: 9
Rotatable Bonds: 17
Heavy Atoms: 38
Systematic name
Program Version Descriptor
ACDLabs 10.04 [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
OpenEye OEToolkits 1.5.0 [[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyl-oxan-2-yl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=P(OC1OC(C(O)C(O)C1O)C)(O)OP(=O)(O)OCC4OC(n2c3N=C(N)NC(=O)c3nc2)C(O)C4O
SMILES_CANONICAL CACTVS 3.341 C[C@H]1O[C@H](O[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N)[C@@H](O)[C@@H](O)[C@@H]1O
SMILES CACTVS 3.341 C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N)[CH](O)[CH](O)[CH]1O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)O
SMILES OpenEye OEToolkits 1.5.0 CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)O
InChI InChI 1.03 InChI=1S/C16H25N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,7-11,14-15,22-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5-,7-,8-,9+,10-,11+,14-,15-/m1/s1
InChIKey InChI 1.03 LQEBEXMHBLQMDB-GDJBGNAASA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB02547
ChEMBL CHEMBL1233001
PubChem 135398578
ChEBI 17661
ZINC ZINC000008218184
HMDB HMDB0001499