Structural Complex
Chemical ID: NDA
IUPAC Name: 3-AMINOMETHYL-PYRIDINIUM-ADENINE-DINUCLEOTIDE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=[PH](OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1)O[PH](=O)OC[C@@H]1CC[C@H]([n+]2ccccc2)O1
InChI: InChI=1S/C20H26N5O7P2/c26-33(28-11-15-4-6-18(30-15)24-8-2-1-3-9-24)32-34(27)29-12-16-5-7-19(31-16)25-14-23-17-10-21-13-22-20(17)25/h1-3,8-10,13-16,18-19,33-34H,4-7,11-12H2/q+1/t15-,16-,18+,19+/m0/s1
InChI Key: NEQSZHPXWRKWHT-RNIPGJKVSA-N
Physiochemical Descriptor:
Formula: C21 H29 N7 O13 P2
Molecular weight: 649.442
Hydrogen Bond Acceptor: 19
Hydrogen Bond Donor: 7
Rotatable Bonds: 18
Heavy Atoms: 43
Systematic name
Program Version Descriptor
OpenEye OEToolkits 1.5.0 [(2R,3S,4R,5R)-5-[3-(aminomethyl)pyridin-1-ium-1-yl]-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES_CANONICAL CACTVS 3.341 NCc1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
SMILES CACTVS 3.341 NCc1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)CN
SMILES OpenEye OEToolkits 1.5.0 c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)CN
InChI InChI 1.03 InChI=1S/C21H29N7O13P2/c22-4-10-2-1-3-27(5-10)20-16(31)14(29)11(39-20)6-37-42(33,34)41-43(35,36)38-7-12-15(30)17(32)21(40-12)28-9-26-13-18(23)24-8-25-19(13)28/h1-3,5,8-9,11-12,14-17,20-21,29-32H,4,6-7,22H2,(H3-,23,24,25,33,34,35,36)/t11-,12-,14-,15-,16-,17-,20-,21-/m1/s1
InChIKey InChI 1.03 HMCRLFVYYFBZEZ-PLEFRAQWSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB03797
PubChem 131704258,5288994