9YTD image
Deposition Date 2025-10-20
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9YTD
Keywords:
DE NOVO PROTEIN/IMMUNE SYSTEM
Title:
Designed antibody vAB66 targeting PAP-HLA A*02:01
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9YTD validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A alpha chain
Gene (Uniprot):HLA-A
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A5I8L1 Pfam ID:PF00129, PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prostatic acid phosphatase-derived peptide
Gene (Uniprot):ACP3
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P15309 EC:3.1.3.2
Polymer Type:polypeptide(L)
Molecule:AD01 nanobody
Chain IDs:D
Chain Length:127
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:vAB66 heavy chain
Chain IDs:E (auth: H)
Chain Length:218
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:vAB66 light chain
Chain IDs:F (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Targeting peptide-MHC complexes with designed T cell receptors and antibodies.
Biorxiv ? ? ? (2025)
PMID: 41332722 DOI: 10.1101/2025.11.19.689381
Primary Citation of related structures
9YTD
Feedback Form
Name
Email
Institute
Feedback