ISDA: 9YQO

Deposition Date 2025-10-15

Release Date 2026-01-21

Last Version Date 2026-01-21

Entry Detail

PDB ID:

9YQO

Keywords:

IMMUNE SYSTEM

Title:

AMC008 v4.2 SOSIP Env trimer in complex with PGT121 and VRC01 Fabs

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Human immunodeficiency virus 1 (Taxon ID: 11676)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.26 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:HIV-1 envelope glycoprotein gp120
Chain IDs:E (auth: A), K (auth: G), Q (auth: O)
Chain Length:488
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:F (auth: B), L (auth: H), R (auth: P)
Chain Length:154
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1

UniProt ID:Q1AII4

Polymer Type:polypeptide(L)
Molecule:VRC01 Fab heavy chain
Chain IDs:A (auth: M), G (auth: C), M (auth: I)
Chain Length:224
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:VRC01 Fab light chain
Chain IDs:B (auth: N), H (auth: D), N (auth: J)
Chain Length:210
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:PGT121 Fab light chain
Chain IDs:C (auth: Q), I (auth: E), O (auth: K)
Chain Length:211
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:PGT121 Fab heavy chain
Chain IDs:D (auth: R), J (auth: F), P (auth: L)
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Conformational Landscape of HIV-1 Env from Closed to Fully Open

Cui, J, Du, J, Lin, Z, Pallesen, J.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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