ISDA: 9YKF

Deposition Date 2025-10-07

Release Date 2025-10-22

Last Version Date 2025-10-22

Entry Detail

PDB ID:

9YKF

Keywords:

HYDROLASE

Title:

Crystal Structure of E. coli D23N YajL

Biological Source:

Source Organism:

Escherichia coli (Taxon ID: 562)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

0.98 Å

R-Value Free:

0.11

R-Value Work:

0.09

R-Value Observed:

0.09

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein/nucleic acid deglycase 3
Gene (Uniprot):yajL
Mutagens:D23N
Chain IDs:A, B
Chain Length:199
Number of Molecules:2
Biological Source:Escherichia coli

UniProt ID:Q46948 Pfam ID:PF01965 EC:3.5.1.124

Ligand Molecules

EDO

Primary Citation

Environmental contributions to proton sharing in protein low barrier hydrogen bonds

Lin, J, Gerlits, O, Kneller, D.W, Weiss, K.L, Coates, L, Hix, M.A, Effah, S.Y, Kovalevsky, A, Walker, A.R, Wilson, M.A, Liebschner, D, Afonine, P.V, Baker, M.L, Bunkoczi, G, Chen, V.B, Croll, T.I, Hintze, B, Hung, L.W, Jain, S, McCoy, A.J, Moriarty, N.W, Oeffner, R.D, Poon, B.K, Prisant, M.G, Read, R.J, Richardson, J.S, Richardson, D.C, Sammito, M.D, Sobolev, O.V, Stockwell, D.H, Terwilliger, T.C, Urzhumtsev, A.G, Videau, L.L, Williams, C.J, Adams, P.D.Show

To Be Published ? ? ? (?)

Primary Citation of related structures